Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq4 140 3e-28 >seq4 Length=4469570 Score = 140 bits (154), Expect = 3e-28 Identities = 380/563 (67%), Gaps = 19/563 (3%) Strand=Plus/Minus Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 |||||| || || || || | ||||||||||| || | || || || || ||||| Sbjct 3869075 ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAA 3869016 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA-AAGA 16319 || |||||| || ||||| || ||||| ||||||| | || | | ||| |||| Sbjct 3869015 TCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGA 3868957 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | || || |||||| | |||||||| | || || |||||| | || | || | Sbjct 3868956 AAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAACCAT--C 3868899 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 || |||| | |||||| || || | || | |||| || || || || || Sbjct 3868898 GA-TCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCAC 3868840 Query 16440 TAAACAATTT-CTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 |||||||| ||||||| | | | ||| |||| |||| || | ||| ||||||||| Sbjct 3868839 GGAACAATTTGCTCTTTT-CGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTAC 3868781 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCGC 16557 || || || || || ||||| ||||| || || || |||||| ||||| || ||||| || Sbjct 3868780 ATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCA-CGCGCCTCAGC 3868722 Query 16558 TATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACTT 16615 | || || || | | || | |||| || |||||||| ||||| ||||| Sbjct 3868721 AACCTGGACATCTTTCATGAA--CCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAG 3868664 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || ||||| || || | | || | ||||||| | |||| | ||||| || | | | Sbjct 3868663 GCGGCAAAGAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCC 3868604 Query 16676 CAAT--CTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCCACT 16732 || | | || ||| |||| ||| ||||||||| |||||| |||| | |||| Sbjct 3868603 CAGTGACGATT--ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGAT-GCCATG 3868547 Query 16733 GCCTTTTTATACATTTTCCAAAT 16755 || || || ||||||| |||||| Sbjct 3868546 GCTTTCTTGTACATTTCCCAAAT 3868524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511319443131280