Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq8 134 2e-26 seq128 114 2e-20 seq146 109 8e-19 seq6 107 3e-18 seq1 107 3e-18 seq312 104 4e-17 seq74 93.3 6e-14 >seq8 Length=4063183 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || ||||| || |||||| | ||| |||| | Sbjct 1948061 ATGCAAATCTTTGTTAAGACCCTTACTGGCAAGACCATAACTCTCGAGGTTGAGAGTTCT 1948120 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| |||| |||| || || |||||||| || ||||| || || |||||||| Sbjct 1948121 GACACAATCGATAATGTTAAGGCA-AAGATTCAAGACAAGGAAGGAATTCCTCCTGATCA 1948179 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| || ||||| ||||| ||||||||||| || |||| | | ||| ||||| Sbjct 1948180 GCAAAGGCTGATCTTTGCTGGAAAGCAATTAGAGGACGGTAGAACTCTTGCAGACTATAA 1948239 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || | || | ||||| || |||||||| Sbjct 1948240 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGTTTGCGTGGTGGTAT 1948290 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||| | ||||| || || || || | ||| |||| | Sbjct 1948974 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATCACCCTTGAGGTTGAGAGTTCT 1949033 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || |||||||||||||| ||||| || |||||||| || Sbjct 1949034 GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 1949093 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | |||||||| || ||||| | |||||| | | || ||| |||||| || Sbjct 1949094 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCTAGCAGATTACAAC 1949153 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||||||| | |||||||| | || || | |||||||| Sbjct 1949154 ATTCAAAAGGAATCAACTCTCCATTTGGTGCTGCGCCTAAGGGGTGGTAT 1949203 Score = 93.3 bits (102), Expect = 6e-14 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || ||| | || || | || || || ||||| || | ||| ||||| || | Sbjct 1948746 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTCGAGGTTGAAAGCTCA 1948805 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || ||| ||| |||| || |||||||| || || || || || || || || | Sbjct 1948806 -GACACTATTGACAATGTTAAGGCA-AAAATTCAGGACAAGGAGGGCATTCCTCCAGACC 1948863 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | |||||||| ||||| ||| | |||||| |||| || | | || || | Sbjct 1948864 AGCAAAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCTGACTACA 1948923 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||| || || || || | || | || | ||| | ||||||||||| Sbjct 1948924 ATATTCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTGCGAGGTGGTAT 1948975 >seq128 Length=1543362 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | || || || || || || ||||||||| | ||| | || ||| Sbjct 1026121 AATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTC 1026062 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || || ||| |||| | ||| ||||||||||| || |||||||| || || || | Sbjct 1026061 A-GACACCATTGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACC 1026003 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | || ||| | |||||| | | ||||| | Sbjct 1026002 AGCAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTTGCTGATTACA 1025943 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| || || ||| | || | || | || | || |||||||| Sbjct 1025942 ACATCCAAAAGGAGTCCACTCTTCACCTTGTCCTTCGCCTTCGTGGTGGTAT 1025891 Score = 107 bits (118), Expect = 3e-18 Identities = 171/240 (71%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | |||||| | ||||| || || || ||| | ||| |||| || | Sbjct 1025664 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1025605 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| || ||| ||||| || || || ||||| || || ||||| || || || | Sbjct 1025604 -GATACTATCGACAATGTTAAAGCA-AAGATCCAAGACAAGGAGGGTATTCCTCCAGACC 1025547 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | || ||||| ||||| ||| | |||||| | | || || | ||||| | Sbjct 1025546 AGCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACA 1025487 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 1025486 ACATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 1025427 Score = 100 bits (110), Expect = 4e-16 Identities = 167/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || || || || ||| | ||| |||| || | Sbjct 1025436 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1025377 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| || |||||||| || || ||||| || || || || Sbjct 1025376 -GATACCATTGACAACGTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 1025318 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||| ||||| ||| | |||||| | | || || | |||||| || Sbjct 1025317 GCAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCAGATTACAA 1025258 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||||||||| |||| | ||| | || | ||||||| || ||| || Sbjct 1025257 CATTCAGAAAGAATCAACCCTGCACCTTGTTCTTCGCCTTAGAGGTGGCATGCAAATTT 1025199 >seq146 Length=1436832 Score = 109 bits (120), Expect = 8e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||||||||| ||||| |||||||| || || || |||||||| || |||||||| Sbjct 797295 CAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTG 797354 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| | | ||||| || ||||| |||||||||||| | ||| | ||| Sbjct 797355 GAAGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTT 797414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| | || ||||| ||||| || | ||| | ||| | Sbjct 47923 ATGCAAATCTTTGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGTTCT 47982 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||| || ||||||||||| ||||| || || Sbjct 47983 GACACCATTGACAATGTTAAGGCCAAAATTCAGGACAAAGAAGGTATTCCACCAGACCAG 48042 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| ||||| || | ||||| | || || | | ||||| || Sbjct 48043 CAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACAAC 48102 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | || ||||| || Sbjct 48103 ATCCAGAAGGAGTCAACCCTTCACTTGGTCCTGCGTCTCCGTGGTGGGAT 48152 >seq6 Length=4150974 Score = 107 bits (118), Expect = 3e-18 Identities = 112/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| | |||| || |||||||| || |||||| ||||||||| || | Sbjct 2891400 AAAATTCAAGACAGGAAAGGCATCCCACCTGACCAGCAAAGG-TTATTTTTGTTGGGCAG 2891458 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | |||||| | | || ||| |||||| ||||||||||| ||||||||| | ||| Sbjct 2891459 CAACTTGAGGATGGAAGGACTCTAGCAGATTACAATATTCAAAAGGAATCAACTCTCCAT 2891518 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || | || | |||||||| Sbjct 2891519 TTGGTGTTGCACCTAAGGGGTGGTAT 2891544 >seq1 Length=7090834 Score = 107 bits (118), Expect = 3e-18 Identities = 112/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| | |||| || |||||||| || || ||| ||||||||| || || Sbjct 277866 AAAATTCAAGACAGGAAAGGCATCCCACCTGACCAGCAGAGG-TTATTTTTGTTGGGAAG 277808 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | |||||| | | || ||| |||||| ||||||||||| ||||||||| | ||| Sbjct 277807 CAGCTTGAGGATGGAAGGACTCTAGCAGATTACAATATTCAAAAGGAATCAACTCTCCAT 277748 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || | |||||||| Sbjct 277747 TTGGTGTTGCGCCTAAGGGGTGGTAT 277722 >seq312 Length=758973 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || || ||||| | ||| | Sbjct 43226 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTAGAGGTGGAAAGTTCT 43167 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | || || ||||| ||||| ||||| || || || ||||| Sbjct 43166 GATACAATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCCCCGGATCAG 43107 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| || || ||||| || || ||||| | || || ||| ||||| || Sbjct 43106 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 43047 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| |||| |||||||| Sbjct 43046 ATCCAGAAGGAGTCTACCCTCCATTTGGTGCTCCGTCTACGTGGTGGTAT 42997 >seq74 Length=2020511 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || || ||||| ||||| || || || ||||| ||||||||||| || || ||||| Sbjct 554249 AAGATCCAGGATAAGGAAGGAATTCCCCCGGATCAGCAAAGGCTTATCTTCGCCGGAAAG 554190 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || ||||| | || || ||| ||||| || || || || || || || | ||| Sbjct 554189 CAGTTGGAGGACGGACGTACTCTAGCTGATTACAACATCCAGAAGGAGTCTACCCTCCAT 554130 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| | ||| |||| |||||||| Sbjct 554129 TTGGTGCTCCGTCTACGTGGTGGTAT 554104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755315730707200