Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq8 104 3e-17 seq146 100 4e-16 >seq8 Length=4063183 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| |||| ||||||||| | || |||||||| ||||||||||| |||| ||| Sbjct 1948242 ATGTTATAGTCTGCAAGAGTTCTACCGTCCTCTAATTGCTTTCCAGCAAAGATCAGCCTT 1948183 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| |||||||||||||| || ||||| Sbjct 1948182 TGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 1948151 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| || || | | |||||||| | ||| ||||| ||| || || || ||||||| Sbjct 1949200 CCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGA-ATGTTGTAATCTGC 1949142 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||| || | ||| || | ||||| |||||||||||||| || ||||| || || || Sbjct 1949141 TAGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGG 1949082 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 1949081 GATGCCTTCCTTATCTTG 1949064 Score = 89.7 bits (98), Expect = 8e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || || ||||| || ||||| |||||||| |||||||| |||||| Sbjct 1948684 AGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 1948625 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 1948624 ATTCCTTCCTTATCTTG 1948608 >seq146 Length=1436832 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || | || | ||| | ||| |||||||| || || ||||| Sbjct 797434 GTTCCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCA 797375 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || |||| | ||| || |||||||| ||||||||||||| ||| |||||||| ||| Sbjct 797374 GCCAGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGA 797315 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||||||||| || Sbjct 797314 GGTATGCCTTCTTTATCCTG 797295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743388345735680