Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq74 113 3e-20 seq18 102 5e-17 seq312 100 2e-16 seq128 100 2e-16 seq146 95.1 8e-15 seq104 95.1 8e-15 seq112 93.3 3e-14 seq10 89.7 3e-13 >seq74 Length=2020511 Score = 113 bits (124), Expect = 3e-20 Identities = 162/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| ||| | ||| || ||||| ||||||||||| | Sbjct 552982 TCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGC 553041 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | |||||||||| | ||||| | || ||||||||| ||| Sbjct 553042 CAGAGTGCGGCCATCCTCGAGCTGCTTGCCTACAAAAATCAACCTCTGCTGGTCTGGGGG 553101 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | | || | |||| || || Sbjct 553102 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGTTCTCAAC 553161 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCA 34388 |||| ||||||| ||| ||||| || || || ||||||||||||| Sbjct 553162 CTCCAGGGTGATGG-TTTCCCGGTAAGGGTCTTAACAAAGATCTGCA 553207 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| | | | || ||| | ||||||| |||||| || ||||| Sbjct 553462 TCCTTCTGGATGTTGTAGTCAGCTACGGTG-CGGCCATCGTCCAGCTGCTTTCCAGCGAA 553520 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| ||||||||| ||| | | ||||| || ||||| ||| | | Sbjct 553521 GATCAGCCTCTGCTGGTCTGGGGGAATCCCTTCCTTATCCTGGATCTTAGCCTTAACGTT 553580 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | |||| ||| || |||| |||||||| || || ||||| || || || Sbjct 553581 GTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCTGTGAGGGTCTTAAC 553640 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 553641 AAAAATCTGCAT 553652 >seq18 Length=3280163 Score = 102 bits (112), Expect = 5e-17 Identities = 162/226 (72%), Gaps = 5/226 (2%) Strand=Plus/Minus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC-AG 34224 || || ||||| ||||| || |||| ||| || |||||| ||||||||||| | | || Sbjct 1292970 CCACGAAGCCTTAGCACTAGATGTAGAGTTGATTTTTTCTGGATGTTGTAGTCCGCCAAG 1292911 Query 34225 CTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCAC 34284 || ||| | || || | |||||| || || ||||| |||| |||||||| || | Sbjct 1292910 GTG-CGGCCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGAT 1292852 Query 34285 GCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGACGT 34343 | || ||||| |||| || || |||| || | || | |||| | |||| || | Sbjct 1292851 TCCTTCTTTGTCTTGTATC-TTGGCCTTAGCATTGTTGATAGTATCGCTGAATTCAACTT 1292793 Query 34344 CCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || |||| ||| ||||| ||||||||||| | |||||||| Sbjct 1292792 CCAGTGTAATGG-TTTACCGGTCAGAGTTTTCACGAGTATCTGCAT 1292748 >seq312 Length=758973 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||| |||||||| || | || ||| |||| Sbjct 43015 AGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCC 43074 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||||||||| || ||||| || |||| ||||| || ||| | | ||||| || Sbjct 43075 TCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCC 43134 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||| || || | |||||||| Sbjct 43135 TGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATGGTC 43194 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||||||||||||||||||||||||| Sbjct 43195 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 43227 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | |||||||||||||| ||| | || || ||||| ||||||||||| | Sbjct 42087 TCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC 42146 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||| || || ||||| || | || ||||||||| ||| Sbjct 42147 AAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGG 42206 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | | || | |||| || || Sbjct 42207 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATGGTGTCGGAGCTCTCAAC 42266 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || ||||| || || || ||||| |||||||| Sbjct 42267 CTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 42314 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || ||| | || ||||| ||||| || ||||| Sbjct 42352 TCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAG 42411 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | ||||||||| ||||| ||| | || Sbjct 42412 ATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTA 42471 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| || |||| |||||||| || |||||||| || || ||| Sbjct 42472 TCAATGGTGTCGGAGCTTTCAACCTCCAAAGTGATGGTCTTCCCGGTGAGGGTCTTAACA 42531 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 42532 AAAATCTGCAT 42542 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || ||| |||| ||||| ||||| || ||||| Sbjct 42580 TCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCCTCCAATTGCTTACCAGCGAAG 42639 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| ||| | | |||||| || ||||| ||| | | | Sbjct 42640 ATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTAGCCTTCACGTTG 42699 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| || |||| |||||||| || ||||| ||||| || || Sbjct 42700 TCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACG 42759 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 42760 AAGATCTGCAT 42770 >seq128 Length=1543362 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| || || || || | |||| |||||||| || |||||||| | Sbjct 1024753 TCCACCACGGAGCCTGAGGACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGC 1024812 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || |||| ||| ||||| || || ||||||| ||| || || || Sbjct 1024813 AAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGATCTGGTGG 1024872 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | |||||||| ||||||| ||||| | || | | || | || | || | Sbjct 1024873 AATCCCTTCCTTGTCCTGTATCTTT-GCTTTCACATTGTCAATAGTGTCAGAGCTCTCCA 1024931 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 | |||| ||||| || || || || ||||| |||||||||||||||||| ||| Sbjct 1024932 CCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTC 1024985 >seq146 Length=1436832 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| || ||||| |||| || |||| |||| Sbjct 47222 AGCACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCT 47163 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||| || || |||| ||||||||| ||| | || |||||||| Sbjct 47162 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCC 47103 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | | | | || | || | ||| || || | ||||| || Sbjct 47102 TGGATC-TTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGT 47044 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| ||||| |||||||| |||||| Sbjct 47043 CTTTCCAGTGAGGGTTTTGACAAAGATTTGCATC 47010 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || || ||||| | |||| || || || ||||||||||| Sbjct 48608 AAACCACCACGGAGACGGAGGACAAGGTGCAGAGTAGACTCCTTTTGGATGTTGTAGTCC 48549 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | ||| | | || || | |||||| ||||| || || |||| ||||||||| Sbjct 48548 GCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGT 48489 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | ||||||||| ||||| ||| | || | | || | ||| | || Sbjct 48488 GGGATTCCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATGGTATCAGAACTCTCC 48429 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| ||||||||||| || || | || |||||||| |||||||| Sbjct 48428 ACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 48379 >seq104 Length=1719749 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| || || | ||| || ||||| ||||||||||||| || ||| | || Sbjct 292598 AGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCC 292539 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | ||||||||||| ||| | | |||||||| Sbjct 292538 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCC 292479 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||||| | || | | || | |||| || || || || | ||||| || Sbjct 292478 TGGATCTTG-GCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGT 292420 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || || |||||||| |||||||||||| Sbjct 292419 CTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 292386 >seq112 Length=1653863 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| ||| | || || | |||||| ||||||||| Sbjct 762779 TCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTTCCTGCGAAA 762838 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| || | || |||||||| ||||| ||| | || | Sbjct 762839 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATTG 762898 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || || | || || || ||||| || || || |||||| Sbjct 762899 TCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCACA 762958 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 762959 AAGATCTGCAT 762969 >seq10 Length=3946082 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| |||||||| || | || ||| | || || | |||||| || ||||| | Sbjct 3853637 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 3853578 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCG 34318 | | ||||||||||| || | | |||||||| ||||| ||||| | || | Sbjct 3853577 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTA-GCTTTGACATTG 3853519 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| ||||||| || || | ||||| || || || || ||||||||||| Sbjct 3853518 TCAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTCACG 3853459 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3853458 AAGATCTGCAT 3853448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323013513266240