Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 141 9e-29 >seq4 Length=4469570 Score = 141 bits (156), Expect = 9e-29 Identities = 561/872 (64%), Gaps = 27/872 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 |||||||| || || ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 3869380 GACATAACAGAGGCCTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCT 3869321 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG-CA 16047 | || ||| ||||| ||||||| ||||| | || || | ||| | | | || Sbjct 3869320 TGTAGGCTAATCAGCTCCATCCAATCAAATGGATTCT--GAGCATT-GTACATCTTGTCA 3869264 Query 16048 T--CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | ||||| | ||| |||||||| || ||||||||||| || | |||| ||||| Sbjct 3869263 TAACCCAAAGCATCCAACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCT 3869204 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 | ||||| || | | | ||| | || || | || | ||||||| | Sbjct 3869203 CCATTCATCCCCACCAGAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCC 3869144 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACT----ATTTAACGGAGGGTTTAATAAGTG 16221 || || || || || | || ||| | || | ||| | | ||| || Sbjct 3869143 ACAGCATCTGCAATAATTCCCCTGACT-CGCTCCTCAGTTAGCTTCGTCCTTAGCAAACT 3869085 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | || || ||| ||||||||||| ||||| |||||||| || |||||||| || Sbjct 3869084 GTAAAGCAA---ACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATT 3869028 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||| || || | || ||||||| || |||||||| | ||||||||| | || || Sbjct 3869027 TGAGAAGGTTAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG----AACAGA 3868972 Query 16342 A----CCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACG 16397 | || ||||| || |||||||| ||||| || ||||| ||||| || | | Sbjct 3868971 AGCTTCCGCTGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGG 3868912 Query 16398 TTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCA 16457 || | || || ||||| ||||| || || || | || |||||| | Sbjct 3868911 TT---TCGGAACCATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGA 3868855 Query 16458 TGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTA 16517 || |||| |||||| || || | | ||||| | ||| || || | || | Sbjct 3868854 TGGTCTCGATTGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCA 3868795 Query 16518 TTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAG 16576 || ||||| ||||| || ||||| |||||||| || || || || || ||||| |||| Sbjct 3868794 ACAGCAAACTGTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAG 3868735 Query 16577 CATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACT 16636 || | || || | | || || || |||||| | || | ||| || ||| Sbjct 3868734 CA-CGCGCCTCAGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACG 3868676 Query 16637 ATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCT 16696 || || || || ||||| || ||||| | || | || |||| | |||| | Sbjct 3868675 ATGCCGTCTGAGGCGGCAAAGAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGAT 3868616 Query 16697 GAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 | || ||| ||||| | | ||| |||| |||||| |||||||| ||||| ||| Sbjct 3868615 GTTAGGTTTTCCCAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAA 3868556 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATAT 16788 || || | || || || ||||||| ||| || Sbjct 3868555 GATGCCATGGCTTTCTTGTACATTTCCCAAAT 3868524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462426123084400