Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq146 104 2e-17 seq8 104 2e-17 >seq146 Length=1436832 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || || | ||||| ||||||||||| ||||||||||| || || Sbjct 797432 TCCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 797373 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || ||||||||||||||| || ||| | || ||||| || ||||| || Sbjct 797372 CAGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 797313 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 797312 TATGCCTTCTTTATC 797298 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| ||||| || || || |||||||| || || Sbjct 47921 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 47862 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || || || ||| |||| | |||||| || || ||| Sbjct 47861 AGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGA 47802 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || || | | |||| | | || ||| |||||| | || Sbjct 47801 ATGCCTTCCTTGTCCTGGATCT-TGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAAC 47743 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||||| | || |||||||| || || || |||||||||||| Sbjct 47742 CTCAAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 47694 >seq8 Length=4063183 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | ||| ||||| || || ||||| ||||||||||| || Sbjct 1948744 CCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGCT 1948685 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| ||||| ||||| || ||| |||| | ||| || ||||| || Sbjct 1948684 AGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGA 1948625 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| |||| | |||||| | ||| ||||||| | ||| Sbjct 1948624 ATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 1948565 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | || || ||||| ||||| ||||| || ||||| Sbjct 1948564 TCAAGAGTAATTGTCTTCCCAGTCAAGGTTTTCACAAAGATCTGCAT 1948518 Score = 96.9 bits (106), Expect = 3e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTC-TTTTTGAATGTTGTAGTCGGC 18157 || || || || | ||| || | ||| ||||| || || |||||| ||||||||||| || Sbjct 1948516 CCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTTGGATGTTGTAGTCAGC 1948457 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||| || || ||||| || ||| |||| || || || ||||| || Sbjct 1948456 TAGAGTTCTTCCATCCTCTAACTGTTTCCCGGCAAAGATCAGCCTCTGCTGATCTGGAGG 1948397 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| | |||||| | ||| ||||||| | ||| Sbjct 1948396 AATCCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAAC 1948337 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | || || ||||| ||||| ||||| || ||||| Sbjct 1948336 CTCAAGAGTAATTGTCTTCCCAGTCAAGGTTTTCACAAAGATCTGCAT 1948289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| ||| | || |||| || || |||||||| |||||||||||||| || || Sbjct 1949200 CCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCT 1949141 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| || | ||||| || ||| | || | || || || || || Sbjct 1949140 AGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGG 1949081 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||||||||| ||||| |||||| | | | |||||| ||| Sbjct 1949080 ATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAACTCTCAACC 1949021 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || || |||||||| || |||||||| ||||| Sbjct 1949020 TCAAGGGTGATGGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCAT 1948974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379275326170230