Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 seq104 100 3e-16 seq146 95.1 1e-14 seq10 95.1 1e-14 seq128 89.7 5e-13 >seq8 Length=4063183 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||| || || |||||| | || ||||| || Sbjct 1948974 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATCACCCTTGAGGTTGAGAGTTCT 1949033 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | ||| || ||||||||| | || || |||||| Sbjct 1949034 GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 1949093 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | | || || ||||| |||||| | || || | |||| | ||| ||||| || Sbjct 1949094 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCT-AGCAGATTACAA 1949152 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| ||||| ||||| ||| |||| || | || ||||| |||| Sbjct 1949153 CATTCAAAAGGAATCAACTCTCCATTTGGTGCTGCGCCTAAGGGGTGGTA 1949202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || || || |||||| | || || ||| || Sbjct 1949202 ATGCAGATTTTTGTGAAGACATTGACTGGGAAGACAATCACCCTGGAGGTAGAAAGTTCA 1949261 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | ||||| ||||| | || || ||||| Sbjct 1949262 GACACCATTGATAATGTGAAGGCAAAGA-TCCAAGACAAAGAAGGGATTCCACCAGACCA 1949320 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||| |||| || |||||||| ||| | || || || |||| | ||||| || Sbjct 1949321 GCAGCGTTTAATTTTTGCTGGCAAGCAGCTTGAGGATGGTAGGACTCTTGCTGATTACAA 1949380 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || || || ||| |||| || Sbjct 1949381 TATCCAGAAAGAGTCCACACTCCATTTGGTGCT 1949413 >seq104 Length=1719749 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || ||||||||| | || ||||| | Sbjct 292384 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 292443 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | |||||| | || |||||||||||| | || || ||| Sbjct 292444 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 292503 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || || ||| | || || | ||| | ||| || Sbjct 292504 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 292563 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| ||||| || || Sbjct 292564 AACATCCAGAAGGAGTCAACTCTCCATCTCGTGCT 292598 >seq146 Length=1436832 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| ||||||| || || |||||| | || |||||| ||| Sbjct 47467 ATGCAAATTTTCGTGAAGACTTTGACAGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 47526 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||||||| | || || |||||| Sbjct 47527 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 47586 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || ||||| ||| | || ||| ||| | ||||| ||| Sbjct 47587 CAAAGGCCGATCTTTGCCGGCAAGCAGCTTGAGGACGGCCGGACCCTTGCTGATTACAAC 47646 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||| |||| || Sbjct 47647 ATCCAGAAGGAATCAACCCTTCACTTGGTGCT 47678 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| | || || || || |||| ||||| || || || | || ||||| ||| Sbjct 56355 ATGCAGGTCTTTGTCAAAACCTTGACTGGCAAGACTATTACACTTGAGGTTGAGAGCTCC 56414 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || |||||| || ||| | || || |||||| Sbjct 56415 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 56474 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAG-CGATTATAA 31371 || | | || || ||||| || ||||||||||| | ||| || || |||||| || Sbjct 56475 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGAC-ATTAGCCGATTACAA 56533 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| |||||||| || | ||||| ||||| |||| Sbjct 56534 TATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGACTCAGGGGAGGTA 56583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||| |||| || || || |||||| | || |||||| ||| Sbjct 47695 ATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTCC 47754 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || |||| | || | || || ||||||||||||| | || || ||||| Sbjct 47755 GACACTATTGACAACGTTAAAGCCAAG-ATCCAGGACAAGGAAGGCATTCCCCCAGACCA 47813 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | | || || || || || ||| | || || ||| | ||||| || Sbjct 47814 GCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACAA 47873 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || || ||||| |||| ||| Sbjct 47874 CATCCAGAAGGAGTCAACCCTTCACTTGGTCCTT 47907 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| || |||||| | || || || |||||| | || || || ||||| ||||| ||||| Sbjct 797297 GGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGA 797356 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || || ||||| |||||||| |||||||| ||||||||||| || || Sbjct 797357 AGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCT 797416 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 797417 GAGGCTCAGGGGAGG 797431 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || || || || || |||||| |||| || ||| || Sbjct 47239 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 47298 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | ||| ||||||||||||| | || || |||||| Sbjct 47299 GACACCATTGACAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 47358 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || || ||||| || | |||||| ||| | ||||| ||| Sbjct 47359 CAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTACAAC 47418 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||||| || |||||||| |||| || Sbjct 47419 ATTCAAAAAGAGTCCACTCTTCACTTGGTGCT 47450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || || || || || |||||| | || || ||| || Sbjct 47011 ATGCAAATCTTTGTCAAAACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCA 47070 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | || | ||| | ||||||||||||| | || || ||||| Sbjct 47071 GACACCATTGACAACGTTAAAGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCGGACCA 47129 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| | |||||| ||| | |||||| || Sbjct 47130 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGCCGTACTCTAGCCGATTACAA 47189 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || |||| || Sbjct 47190 TATTCAGAAGGAGTCAACTCTCCACTTGGTGCT 47222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || |||||||||||| | || || ||| || Sbjct 55899 ATGCAGATTTTCGTCAAGACCCTCACTGGGAAAACGATCACCCTTGAGGTGGAAAGTTCA 55958 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | || || ||||||||| ||| | || || ||||| Sbjct 55959 GACACCATTGACAACGTTAAGGCTAAG-ATCCAGGACAAGGAGGGCATCCCTCCAGACCA 56017 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || || |||||| | ||||| ||| | ||||| || Sbjct 56018 GCAGAGACTGATCTTTGCCGGAAAACAGCTTGAAGATGGCCGTACTCTCGCTGATTACAA 56077 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || |||||||| |||| || Sbjct 56078 TATCCAGAAGGAGTCCACTCTTCACTTGGTGCT 56110 >seq10 Length=3946082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || ||||| || || || |||||||| |||| |||||| || Sbjct 3853445 AAAATGCAGATCTTCGTGAAAACTCTTACGGGGAAGACGATCACACTCGAAGTTGAATCG 3853504 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | || | |||||| | || ||||||||||| | || || ||| Sbjct 3853505 AGCGACACTATTGACAATGTCAAAGCTAAGATTCAAGACAAGGAAGGTATTCCACCGGAC 3853564 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATT 31367 |||||||| | || ||||| || || ||| | ||||| | | | ||| | ||| |||| Sbjct 3853565 CAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAAGA-TGGACGTACTCT-AGCTGATT 3853622 Query 31368 ATAACATTCAAAAAG 31382 | |||||||| |||| Sbjct 3853623 ACAACATTCAGAAAG 3853637 >seq128 Length=1543362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || |||||| |||| || || || || || | || ||||| || Sbjct 1025209 CATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTC 1025150 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 || | | || | |||||| || ||| | | ||||||| || | || || |||| Sbjct 1025149 AGATACCATTGACAACGTCAAAGCAAAGATTCAAG-ACAAGGAGGGTATTCCCCCAGACC 1025091 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTAT 31369 |||||||| | || || ||||| ||||| | || ||| | |||| | ||| || ||| Sbjct 1025090 AGCAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCT-AGCAGACTAT 1025032 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || || || ||||| ||| |||| Sbjct 1025031 AACATCCAGAAGGAGTCAACTCTCCATTTGGT 1025000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || |||||||| || || || || || | || || || || Sbjct 1026120 ATGCAAATCTTTGTTAAAACTCTGACCGGAAAGACTATAACTCTTGAGGTCGAGAGCTCA 1026061 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||||||||| | || || |||||| Sbjct 1026060 GACACCATTGATAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 1026001 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||| | || || || ||||| |||||| | ||||| | || | || ||||| || Sbjct 1026000 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGA-TGGCCGAACACTTGCTGATTACAA 1025942 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| ||||| || || |||||||| || || ||| | || | || |||| Sbjct 1025941 CATCCAAAAGGAGTCCACTCTTCACCTTGTCCTTCGCCTTCGTGGTGGTA 1025892 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || || ||||| | || || || || Sbjct 1024980 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACAATCACATTGGAGGTGGAGAGCTCT 1024921 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || ||| || ||| || |||||||||||| | || || || || Sbjct 1024920 GACACTATTGACAATGTGAAAGCAAAGA-TACAGGACAAGGAAGGGATTCCACCAGATCA 1024862 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || |||||||||||| |||| || || | || || || Sbjct 1024861 ACAGAGGCTCATCTTTGCTGGCAAACAGCTGGAGGATGGCCGCACCCTTGCAGACTACAA 1024802 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || ||||| || ||||||||||| || || || || Sbjct 1024801 TATCCAGAAAGAGTCTACTCTTCATCTTGTCCTCAGGCT 1024763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445683632323680