Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 138 1e-27 seq242 102 8e-17 seq84 84.2 2e-11 >seq4 Length=4469570 Score = 138 bits (152), Expect = 1e-27 Identities = 558/872 (64%), Gaps = 8/872 (1%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 ||| ||||| || | ||||| || | || || ||||||||||| |||| ||| || Sbjct 3869366 CTTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCA 3869308 Query 11397 ACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTA 11456 |||||| | ||| ||||| | ||||| | | || ||| |||| || | | Sbjct 3869307 GCTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCA 3869248 Query 11457 ATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAA 11516 | |||||||| ||||| |||||||| || | | ||| ||| | |||||| || | | Sbjct 3869247 ACAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCA 3869188 Query 11517 GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTA 11576 || | |||| |||| | || |||||| ||||||| | || ||||| || | Sbjct 3869187 GAGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAA 3869128 Query 11577 TCGACGTTATAACTTCCTTAGATGG--TGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | | | | |||| || | | | | | | || | |||| |||||||| Sbjct 3869127 TTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGC--AAACACGC 3869070 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||||||||| || |||||||||||||| |||| ||||| || || |||||||| || Sbjct 3869069 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 3869010 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| || || |||||||| | ||||||||| | | || || ||||| || || Sbjct 3869009 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 3868950 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814 || ||| ||||| || || | | || | | | | | | ||||| Sbjct 3868949 TTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAACCATCGATCCAACG 3868890 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 |||||| | || ||||||| || || || || || || || || || | Sbjct 3868889 AAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAATTT 3868830 Query 11875 CATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 | ||||| | ||| ||| || | || | | ||||| ||||| || ||||| Sbjct 3868829 GCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAATG 3868770 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 ||||| || || || ||||| || ||||||||| || ||||| | | ||| ||||| Sbjct 3868769 GATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACATC 3868710 Query 11995 -CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 ||| || ||| | || | ||||| || || || || | ||||| || | Sbjct 3868709 TTTCAT-GAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAGAAGG 3868651 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 | || | ||| | || || | | |||| | |||| || ||||| | | || Sbjct 3868650 CAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATTAT 3868591 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 | |||| ||| |||||||| || ||||| ||| ||||| | || || ||||||| Sbjct 3868590 CAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACATTT 3868531 Query 12174 TCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||| || | |||||| ||| ||||| ||| Sbjct 3868530 CCCAAATCTGTGGATACTGAATTGGGAACATA 3868499 >seq242 Length=1004679 Score = 102 bits (112), Expect = 8e-17 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| |||||| || || ||||||| ||| ||||||||||| ||||||| || Sbjct 787679 TTGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTG 787620 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| | | |||||| | || ||| || ||||| | ||| || || | ||| Sbjct 787619 AGACATCAACTGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGA 787560 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTTTAAGTAG 38576 ||| ||||| ||||| |||||||| ||||||| || || | | || |||||| || Sbjct 787559 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATC--TTTAAG-AG 787503 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTAT 38634 || || |||| | ||||| | ||||| ||| ||| | | ||||| |||||| Sbjct 787502 GTAAGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTAT 787445 >seq84 Length=1873685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/168 (71%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38386 AAACAACTAGACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCAT 38443 || ||| | ||||| ||||||| ||||||||| || ||||| | || ||||| |||| Sbjct 702443 AATCAAATTGACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCAT 702502 Query 38444 GTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGC 38503 | |||||||| | | |||| ||| ||| || | || || || |||||| Sbjct 702503 GAGTGAACCATCTCTGAGACATCAAATGATAAGTCTTGATGGCAGATTCAATATCATTCT 702562 Query 38504 CGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 || || || | ||| || ||||| |||||||||||||| ||||||| Sbjct 702563 TATGTATCCCAACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCTA 702610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468437806657760