Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq146 89.7 4e-13 seq312 84.2 2e-11 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| ||| |||||| || | ||||||||||| Sbjct 47237 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCT 47178 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | || ||||| ||||| |||| | ||| || || | || Sbjct 47177 AGAGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 47118 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| |||| || || ||| ||||| ||| || || Sbjct 47117 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTC-TGAGCTTTCCAC 47059 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 47058 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTGACAAAGATTTGCAT 47011 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||| | ||| | || ||||| || | ||||||||||| Sbjct 48377 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCT 48318 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | | || |||||||| ||||| ||||||||||| | || ||||| | || Sbjct 48317 AATGTCCTTCCATCTTCCAATTGCTTGCCAGCAAAAATCAACCTTTGCTGATCTGGTGGG 48258 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| ||||| || ||| ||| | || || || ||| |||||| ||| || | Sbjct 48257 ATACCCTCTTTGTC-CTGAATCTTTGCCTTAACGTTGTCAATGGTGTCG-GAGCTTTCCA 48200 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| || || || | || ||||| || |||||||| Sbjct 48199 CCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 48151 >seq312 Length=758973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||||| || |||||| || | |||||||| | Sbjct 43000 CCACCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 43059 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||| || || ||||| || || | | || ||||| | || Sbjct 43060 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 43119 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || ||| ||| | || || || | | ||| || | || || Sbjct 43120 ATTCCTTCCTTATC-CTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCAC 43178 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || |||||||| |||||||||||||| || ||||| Sbjct 43179 CTCTAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 43226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381300559469532