Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 188 1e-42 seq242 86.0 8e-12 >seq4 Length=4469570 Score = 188 bits (208), Expect = 1e-42 Identities = 582/894 (65%), Gaps = 20/894 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || | || || || ||||||||||| |||| | || Sbjct 3869365 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 3869306 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| | |||| || || || | | | ||||| || | | Sbjct 3869305 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 3869246 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||||||| |||| |||||||| ||| | |||||| || | |||||| || | || Sbjct 3869245 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 3869186 Query 41954 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | |||||||| |||| | ||| | | | ||| || || || |||| |||| Sbjct 3869185 GCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCACAGCATCTGCAATAA 3869128 Query 42012 TAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATGTTTAAACATCAAACA 42066 | || ||| || ||| || || || | || ||| | | |||||| Sbjct 3869127 TTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACA 3869073 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 || ||||| ||||||| ||| || ||||| |||||| || || || || || | ||| Sbjct 3869072 CGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCC 3869013 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||||| || || ||||| | ||||||||| || || ||| ||||| || Sbjct 3869012 AGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAAT 3868953 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTAT 42243 ||||| || ||||| || | | | ||| | | ||| || ||| || Sbjct 3868952 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAAC---CATCGAT 3868896 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | ||||| | |||||||||| |||||||| || || || || ||| || Sbjct 3868895 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAA 3868836 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 | | | | ||||| | | ||| || | || | || | || | ||| ||||| || Sbjct 3868835 CAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTC 3868776 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| || || |||||||| || || || || |||||| | ||||| | |||||| Sbjct 3868775 GGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTG 3868716 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || ||| | || | | |||| | || || || || ||||| ||| ||||| Sbjct 3868715 GACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAA 3868656 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || || | ||||| | || |||| | |||| | | ||||| || | ||| | | Sbjct 3868655 GAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACG 3868596 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 |||| ||||| ||| ||||||||||||||||| || ||||| || || || || Sbjct 3868595 ATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTA 3868536 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| | ||| || | |||| ||||||||||| ||| |||| || ||| || Sbjct 3868535 CATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 3868482 >seq242 Length=1004679 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | ||||| || || | |||| | || | || ||| |||| ||| ||| Sbjct 788090 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 788031 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| || || || || ||||| || ||| | ||||| || ||| | ||| Sbjct 788030 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 787971 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || |||||||| || ||| || | || ||| || | |||||||| ||| Sbjct 787970 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATG 787911 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| ||||||||||| ||||| | || || |||||| Sbjct 787910 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 787869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671014586229040