Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq128 93.3 4e-14 seq146 89.7 5e-13 >seq128 Length=1543362 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 143016 ||||||| |||||||| || ||||| | || || || || || ||||| || || ||| Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || ||| ||| || ||||||||||||||| |||||| ||| ||||| || || || Sbjct 1025042 -AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1025100 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| ||| ||| | | || | || || | || || Sbjct 1025101 AATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTCTCAAC 1025160 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| || || || || |||||||| Sbjct 1025161 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| ||||||||||| | ||| | ||||| || ||| Sbjct 1025918 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1025977 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| ||||||| | ||||| || || || || ||||| ||||| |||||| Sbjct 1025978 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1026037 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | | || || |||| ||| | ||||| |||||| Sbjct 1026038 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 1026097 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || || |||||||| Sbjct 1026098 AGAGTTTTAACAAAGATTTGCAT 1026120 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/129 (77%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 143029 || ||| | ||||| || |||||||| || ||||||||||| || || |||| Sbjct 797417 CAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGT--TCGACCA 797360 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| Sbjct 797359 TCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTA 797300 Query 143090 TC--GGTAA 143096 || ||||| Sbjct 797299 TCCTGGTAA 797291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506920260101280