Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq146 89.7 4e-13 seq128 86.0 5e-12 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| |||||||||||||| || ||||| || |||| || | | || || ||||| Sbjct 56786 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCGAGCTG 56727 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || |||||||| || || | ||||| ||||| ||| || Sbjct 56726 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATCTT 56667 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| | |||| || | || |||||||| || || Sbjct 56666 GGCCTTCACGTTGTCAATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGT 56607 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||||||||| ||||| Sbjct 56606 CAAGGTCTTGACAAAAATCTGCAT 56583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| || ||||| ||||||| || | | || || ||||| Sbjct 48582 GTGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTG 48523 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || |||||||| ||| || | ||||| ||||| ||| || Sbjct 48522 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTT 48463 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | ||||| | |||| || | || |||||||| || || Sbjct 48462 AGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGT 48403 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 48402 CAAGGTCTTCACAAAAATCTGCAT 48379 >seq128 Length=1543362 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| | ||||||| || | || |||||||| || || || || || || Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| || |||||||| ||| | || | | |||||| || ||| Sbjct 1025042 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1025101 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||| || ||| || | | | | ||||| | ||| Sbjct 1025102 ATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTCTCAACC 1025161 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| || || || || ||||| ||||||||||||||||| Sbjct 1025162 TCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414497748590476