Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq312 100 2e-16 seq104 91.5 1e-13 seq112 86.0 5e-12 seq74 84.2 2e-11 seq10 84.2 2e-11 >seq312 Length=758973 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| ||||| || || |||||| || |||||||||||||| | || ||||||| Sbjct 43017 CACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTC 43076 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| || | || | | ||||||||| || | | |||||| ||| Sbjct 43077 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 43136 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||| | | | || || ||||| | | ||| ||| | || ||||| Sbjct 43137 AATCTTAGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCCACCTCTAGGGTGATGGTC 43194 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||||||||||||||| ||||||||| Sbjct 43195 TTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 43227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| || ||||| ||| |||||| ||||||||||| || | | Sbjct 42088 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCG-C 42146 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||| ||||| ||||| || | || || | |||||| || || Sbjct 42147 AAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGG 42206 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||| || || ||| | | | ||||| |||| ||| Sbjct 42207 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATGGTGTCGGAGCTCTCAAC 42266 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || ||||| || || || |||||||||||||| Sbjct 42267 CTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 42314 >seq104 Length=1719749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || || |||||| || |||||||| || || || || || | |||| Sbjct 292596 CACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 292538 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || |||| ||||||||||| || || | | |||||||||| Sbjct 292537 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 292478 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || |||| | | ||||| |||| |||||| ||| | || || || | Sbjct 292477 GGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCT 292418 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || |||||||| || ||||||||| Sbjct 292417 TCCCCGTTAGGGTTTTCACGAAGATCTGCATC 292386 >seq112 Length=1653863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||| | | ||| | ||||| |||||||||||| || | Sbjct 814997 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCGAGCTGCTTACCGGCGAA 814938 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || |||||||| || || | | ||||||||| ||| || ||| | | Sbjct 814937 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 814878 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||||| ||| | || || || || || || || || || || Sbjct 814877 GTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTTAC 814818 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 814817 AAAGATCTGCAT 814806 >seq74 Length=2020511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| || ||||| || |||||| ||||||||||| |||||| Sbjct 552983 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 553042 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | ||||| |||||||| || | |||| || | |||||| || || Sbjct 553043 AGAGTG-CGGCCATCCTCGAGCTGCTTGCCTACAAAAATCAACCTCTGCTGGTCTGGGGG 553101 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||| || || ||||| | | ||||| |||| ||| Sbjct 553102 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGTTCTCAAC 553161 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCA 48725 ||| | || |||| ||| ||||| || || || ||||| ||||||| Sbjct 553162 CTCCAGGGTGATGG-TTTCCCGGTAAGGGTCTTAACAAAGATCTGCA 553207 >seq10 Length=3946082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||||||||| | || | || || |||||||| ||| || | Sbjct 3853638 CCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 3853579 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || || |||||||| ||| || | || ||||||||| ||| || |||| | Sbjct 3853578 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 3853519 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || ||| | || || |||| ||| || || || || || ||||||||||| Sbjct 3853518 TCAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTCACG 3853459 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 3853458 AAGATCTGCAT 3853448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421174939578854