Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq438 123 1e-23 seq42 122 5e-23 seq20 120 2e-22 seq263 116 2e-21 seq241 116 2e-21 seq181 116 2e-21 seq389 114 7e-21 seq76 114 7e-21 seq21 114 7e-21 seq4 113 2e-20 seq768 111 8e-20 seq495 111 8e-20 seq424 111 8e-20 seq219 111 8e-20 seq106 111 8e-20 seq670 109 3e-19 seq400 109 3e-19 seq101 109 3e-19 seq52 109 3e-19 seq544 102 4e-17 seq543 100 1e-16 seq153 98.7 5e-16 seq442 95.1 6e-15 seq374 86.0 3e-12 seq124 82.4 4e-11 >seq438 Length=476679 Score = 123 bits (136), Expect = 1e-23 Identities = 82/92 (89%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| | |||| |||| ||||||||| | | |||||||| |||||||||||||||||| Sbjct 431887 ATTAAGATAAAAACAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 431828 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 431827 CACGACGCTCTAACCAACTGAGCTAATGGGCC 431796 >seq42 Length=2527457 Score = 122 bits (134), Expect = 5e-23 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| | | |||||| |||| ||| ||||||||| | | |||||||| ||||||||||| Sbjct 1761723 ATAAAAACTTAATATAAAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 1761664 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||||||||||||||||||| Sbjct 1761663 TTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1761625 >seq20 Length=3188724 Score = 120 bits (132), Expect = 2e-22 Identities = 83/94 (88%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| |||||||||| | |||||||||| | | |||||||| |||||||||||||||| Sbjct 1348290 GAAGTAATAAAAAA---ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 1348346 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||||||||||||||||||| Sbjct 1348347 AGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1348380 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1508033 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1508092 Query 11512 CAACTGAGCTAATGGGCCGTCGACGA 11537 |||||||||||||||||| | || || Sbjct 1508093 CAACTGAGCTAATGGGCCTTTGATGA 1508118 >seq263 Length=910421 Score = 116 bits (128), Expect = 2e-21 Identities = 90/106 (85%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAA-TCAAA----TTGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||| | | |||||| |||||| || || |||||||||| | | |||||||| |||| Sbjct 370980 AAACAAAAAATTAAAAAAAAAATCGAAAATCTTGGCCCATGCAGGTCTCGAACCTGCGAC 371039 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 371040 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 371085 >seq241 Length=1006898 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 11443 TAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||||||| |||| |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 541013 TAAAAAAACAAAACAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 540954 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 540953 ACGACGCTCTAACCAACTGAGCTAATGGGCC 540923 >seq181 Length=1232176 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 660755 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 660814 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 660815 CAACTGAGCTAATGGGCC 660832 >seq389 Length=557719 Score = 114 bits (126), Expect = 7e-21 Identities = 82/95 (86%), Gaps = 4/95 (4%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||| |||| || |||||||||| | | |||||||| ||||||||||||||| Sbjct 397499 AGAAGTAAAAAAAGAT----TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 397554 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||||||||||||||||| Sbjct 397555 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 397589 >seq76 Length=2002897 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1375898 AACAAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1375841 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 1375840 GACGCTCTAACCAACTGAGCTAATGGGCC 1375812 >seq21 Length=3070274 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 247357 AATAAAAAAATAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 247300 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 247299 GACGCTCTAACCAACTGAGCTAATGGGCC 247271 >seq4 Length=4469570 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 568730 AAAACAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 568671 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 568670 TCTAACCAACTGAGCTAATGGGCC 568647 >seq768 Length=122186 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 57808 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 57749 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 57748 CTGAGCTAATGGGCC 57734 >seq495 Length=379877 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 105232 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 105291 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 105292 CAACTGAGCTAATGGGCC 105309 >seq424 Length=499964 Score = 111 bits (122), Expect = 8e-20 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| || ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 483686 AAAATTAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 483629 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||||||||||||||||||| Sbjct 483628 TCTAACCAACTGAGCTAATGGGCC 483605 >seq219 Length=1090188 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 466409 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 466350 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 466349 CTGAGCTAATGGGCC 466335 >seq106 Length=1697319 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1035648 ATAAAAAAATATTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1035589 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 1035588 ACGCTCTAACCAACTGAGCTAATGGGCC 1035561 >seq670 Length=200733 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 81778 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 81837 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 81838 TGAGCTAATGGGCC 81851 >seq400 Length=528040 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 134003 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 134062 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 134063 TGAGCTAATGGGCC 134076 >seq101 Length=1743766 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 995703 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 995644 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 995643 TGAGCTAATGGGCC 995630 >seq52 Length=2276819 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 2108038 AAGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 2107979 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 2107978 AACTGAGCTAATGGGCC 2107962 >seq544 Length=317980 Score = 102 bits (112), Expect = 4e-17 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| |||| |||| | ||||||||| | | |||||| | ||||||||||||||| Sbjct 233156 AGAAAAAATAGAAAAATATTTTGGCCCATACAGGTCTCGAACTTGCGACCTTCGCGTTAT 233097 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||| |||||||||||||||||||| Sbjct 233096 TAGCACGATGCTCTAACCAACTGAGCTAATGGGCC 233062 >seq543 Length=318280 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | || ||||| | ||||||||||||||||||||||||||| |||||| Sbjct 44866 TGGCCCATGCAGGTCTCAAACCTGCAACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44925 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 44926 TGAGCTAATGGGCC 44939 >seq153 Length=1414985 Score = 98.7 bits (108), Expect = 5e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| ||||||| | ||||||||||| | | |||||||| ||| ||||||||||| Sbjct 309661 TTAAAAAAAAATTTAGAATTGGCCCATGCAGGTCTCGAACCTGCGA---TCGCGTTATTA 309717 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||| |||||||||||||||||||| Sbjct 309718 GCACGACGGTCTAACCAACTGAGCTAATGGGCC 309750 >seq442 Length=469271 Score = 95.1 bits (104), Expect = 6e-15 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 372321 TCGAACCTGCGACCTTCACGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 372379 >seq374 Length=585542 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||| | ||||||||||||| |||| |||||||||||||||||||| Sbjct 449990 TCGAACCTGCGACCTTCACATTATTAGCACGACACTCTAACCAACTGAGCTAATGGGCC 449932 >seq124 Length=1571163 Score = 82.4 bits (90), Expect = 4e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||| | ||||||||||||||||||||||||||||| ||||| |||| ||||||||| Sbjct 931782 TCTAACATGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAATTGAGGTAATGGGCC 931840 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261443861430904