Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq127 159 5e-35 seq430 147 3e-31 seq103 141 1e-29 seq340 123 4e-24 seq16 123 4e-24 seq73 120 5e-23 >seq127 Length=1543856 Score = 159 bits (176), Expect = 5e-35 Identities = 183/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||| |||||||||||||||| ||||| ||||||||||| || | || |||||| | || Sbjct 186972 TCTTAGAGATAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGG 186913 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || |||||| ||||||| | ||||||| |||| ||||| || ||||||||||| Sbjct 186912 TGGTGTGAAGCGTATCTCTGGTCTCATCTATGAGGAGACTCGTGGAGTGTTGAAGATCTT 186853 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| || || ||| || |||||||| | | |||||||| Sbjct 186852 TTTGGAGAATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGT 186793 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | |||||||| ||||| | || || | | | ||||| ||||| Sbjct 186792 TACTGCTATGGATGTTGTCTATGCTTTGAAGAGACAGGGAAGGACTCTCTATGGATTTGG 186733 Query 16693 AAGTTA 16698 |||| Sbjct 186732 CGGTTA 186727 Score = 156 bits (172), Expect = 7e-34 Identities = 180/241 (75%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||||||||| ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 244554 GAGACAACATCCAAGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 244495 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| || ||||||| |||| |||| || ||||||||||| | Sbjct 244494 TGAAGCGTATCTCTGGTCTGATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTT-TTGG 244436 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||| || || ||| || |||||||| | | ||||||||||| Sbjct 244435 AGAATGTGATTCGTGATTCTGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTCACTG 244376 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||| ||||| | || || | | | ||||| |||||| ||| Sbjct 244375 CTATGGATGTTGTCTATGCTTTGAAGAGACAGGGAAGGACTCTCTATGGATTTGGAGGTT 244316 Query 16698 A 16698 | Sbjct 244315 A 244315 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 180230 GAGACAACATCCAGGGCATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 180171 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| ||||||| || ||||||| |||| |||| || ||||||||||| | Sbjct 180170 TGAAGCGTATCTCTGGTCTGATCTATGAGGAGACCCGTGGAGTGTTGAAGATCTTTTTGG 180111 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||| | || ||| || |||||||| | | |||||||| || Sbjct 180110 AGAATGTGATTCGTGATTCCGTCACCTACACTGAGCACGCCAGGAGGAAGACTGTTACTG 180051 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||| ||||| | || || | | | ||||| ||||| ||| Sbjct 180050 CTATGGATGTTGTCTATGCTTTGAAGAGACAGGGAAGGACTCTCTATGGATTTGGTGGTT 179991 Query 16698 A 16698 | Sbjct 179990 A 179990 Score = 134 bits (148), Expect = 2e-27 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| || ||||| ||||||||||| || | || |||||| | ||||| | Sbjct 234860 GAGATAACATCCAGGGTATCACTAAGCCAGCTATTCGCAGGCTTGCTCGTAGGGGTGGTG 234801 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| |||| || || ||||||| |||| |||| || ||||||||||| | Sbjct 234800 TGAAGCGTATCTCCGGTCTGATCTATGAGGAGACCCGTGGAGTATTGAAGATCTTTTTGG 234741 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||| || || ||| |||||||| || | | |||||||| || Sbjct 234740 AGAATGTGATTCGTGACTCTGTCACCTACACCGAGCATGCCAGGAGGAAGACTGTTACTG 234681 Query 16638 CCATGGATATCGTCTATGC 16656 | |||||| | |||||||| Sbjct 234680 CGATGGATGTTGTCTATGC 234662 >seq430 Length=490134 Score = 147 bits (162), Expect = 3e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | || || |||||||| ||||| ||||| ||||| ||||| Sbjct 62386 GCAAAGCGTCACCGTAAGGTGCTCCGTGATAACATTCAAGGTATCACTAAGCCTGCTATT 62445 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||| |||||||| | || ||||| |||||| || ||| | ||||||| |||| | Sbjct 62446 AGGCGTTTGGCTCGTAGAGGAGGAGTGAAGCGTATCAGTGGGCTAATCTATGAGGAGACT 62505 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| |||||||||||||| | ||| || || | |||| || | ||| || ||| Sbjct 62506 CGTGGAGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTTACCTACACTGAG 62565 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | ||||| ||||| | |||||| | ||||||||| | || | ||||| Sbjct 62566 CATGCTAGGAGGAAGACGGTCACTGCTATGGATGTTGTCTATGCACTCAAGAGACAAGGA 62625 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 | | | |||||||||||| Sbjct 62626 AGGACTCTGTATGGTTTTGGA 62646 Score = 143 bits (158), Expect = 4e-30 Identities = 180/247 (73%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| |||||||| ||||| ||||| ||||| ||||| | ||| |||||||| | || Sbjct 33427 TCTTCGTGATAACATTCAAGGTATCACTAAGCCTGCTATTAGGCGTTTGGCTCGTAGAGG 33368 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||||| |||||| || |||| | ||||||| |||| ||||| |||||||||||||| Sbjct 33367 AGGAGTAAAGCGTATCAGTGGACTAATCTATGAGGAGACTCGTGGAGTTTTGAAGATCTT 33308 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | ||| || || | |||| || | ||| || ||||| |||| | ||||| || Sbjct 33307 TTTGGAGAATGTGATTCGTGATTCTGTTACCTACACTGAGCATGCTAGGAGGAAGACGGT 33248 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | || |||||| | || | ||||| | | | || || ||||| Sbjct 33247 CACTGCTATGGATGTTGTTTATGCACTCAAGAGGCAAGGAAGGACTCTATACGGATTTGG 33188 Query 16693 AAGTTAA 16699 ||||| Sbjct 33187 TGGTTAA 33181 >seq103 Length=1736182 Score = 141 bits (156), Expect = 1e-29 Identities = 178/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || || |||||||||||||| ||| | || |||||| | ||||| | Sbjct 406232 GAGATAACATTCAGGGTATTACCAAGCCAGCTATTCGTAGGCTTGCTCGTAGAGGTGGTG 406291 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| ||| |||||||||| || Sbjct 406292 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGAGTTCTGAAGATCTTTCTTG 406351 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || | ||||||| || || || || ||||| |||| | |||||||| || Sbjct 406352 AAAATGTGATTCGTGATGCTGTTACA-TACACTGAGCATGCTAGGAGAAAGACTGTGACG 406410 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 | |||||| | || ||||| | || | || || | | |||| || |||||| || Sbjct 406411 GCTATGGATGTTGTTTATGCTCTTAAGAGGCAGGGAAGGACCCTTTACGGATTTGGAGGT 406470 Query 16697 TA 16698 || Sbjct 406471 TA 406472 Score = 102 bits (112), Expect = 1e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 ||||||||||||| | || ||| |||||| ||| || | || |||||| | ||||| | Sbjct 414403 GAGATAACATCCAGCGTATTACCTAGCCAGGTATTTGTAGGCTTGCTCGTAGAGGTGGTG 414462 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | ||||| || | ||||| || | |||||||| || Sbjct 414463 TGAAGCGTATTTCTGGATTGATTTATGAGGAAACTCGTGGAGTGCTTAAGATCTTTCTTG 414522 Query 16578 AGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | | || || ||||||| || || || || ||||| |||| | |||||| | | Sbjct 414523 AAAATGTGATTTGTGATGCTGTTACA-TACACAGAGCATGCTAGGAGAAAGACTCTGATG 414581 Query 16637 TCCATGGATATCGTCTAT 16654 | |||||||| ||||| Sbjct 414582 GCTATGGATATTTTCTAT 414599 >seq340 Length=664521 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || ||||| ||||| || ||||||||||| || | || |||||| | ||||| | Sbjct 404054 GAGACAATATCCAGGGAATTACAAAGCCAGCTATTCGAAGACTCGCTCGTAGAGGTGGTG 404113 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||| ||| | || ||||||| ||||| |||||||||||||| | Sbjct 404114 TGAAGCGTATTTCTGGGTTGATTTACGAAGAGACTCGTGGGGTTTTGAAGATCTTTTTGG 404173 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| || | || || || ||||||| | ||||| || || Sbjct 404174 AAAATGTGATTCGTGATTCTGTAACTTACACAGAACACGCTAGGAGAAAGACGGTTACTG 404233 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || |||||| | || | ||||| | | |||| || ||||| ||| Sbjct 404234 CTATGGATGTTGTTTATGCACTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 404293 Query 16698 A 16698 | Sbjct 404294 A 404294 >seq16 Length=3295453 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| || || || ||||| || ||||||||||| ||| | || |||||| | ||||| | Sbjct 72750 GAGACAATATTCAGGGAATTACAAAGCCAGCTATTCGTAGACTCGCTCGTAGAGGTGGTG 72809 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| | ||||||||| | || ||||||| ||||| ||| |||| ||||| | Sbjct 72810 TGAAGCGTATATCTGGATTGATTTACGAAGAGACTCGTGGGGTTCTGAAAATCTTTTTGG 72869 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 | | || || | |||| || | || || |||||||||| | ||||| || || Sbjct 72870 AAAATGTGATTCGTGATTCTGTAACTTACACAGAGCACGCTAGGAGAAAGACGGTTACTG 72929 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || |||||| | || | ||||| | | |||| || ||||| ||| Sbjct 72930 CTATGGATGTTGTTTATGCACTTAAGAGGCAAGGAAGGACCCTTTACGGATTTGGGGGTT 72989 Query 16698 A 16698 | Sbjct 72990 A 72990 >seq73 Length=2044786 Score = 120 bits (132), Expect = 5e-23 Identities = 191/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | ||| || |||||||| || |||||||| ||||| || || Sbjct 1718985 GCAAAACGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACGAAGCCGGCGATA 1718926 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | | |||| | | |||||||| ||| | || ||||||| |||||||||| | Sbjct 1718925 AGGAGGTTGGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGATTGATCTATGAAGAAACA 1718866 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| || || | |||| || | || || || Sbjct 1718865 AGAGGTGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCTGTGACTTACACTGAA 1718806 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||| | |||||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 1718805 CATGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 1718746 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTA 16706 | | |||| || ||||| |||||| | ||| Sbjct 1718745 AGAACTCTTTACGGGTTTGGTGGTTAATTTACTA 1718712 Score = 95.1 bits (104), Expect = 2e-15 Identities = 181/267 (68%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| || | | ||| || || ||||| ||||||||||| ||||| || || Sbjct 1716975 GCAAAACGTCACCGGAAAGTTCTCCGTGACAACATTCAAGGAATCACTAAGCCGGCGATT 1716916 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | | || | | |||||||| ||| | || ||| || |||||||||| | Sbjct 1716915 CGGAGGTTAGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGGCTGATCTATGAAGAAACA 1716856 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| || || | |||| | | || || || Sbjct 1716855 AGAGGTGTTTTGAAGATCTTTTTGGAGAATGTGATTCGTGATTCGGTTACTTACACTGAA 1716796 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || ||| | || ||||| || | |||||| | || ||||| ||||| | ||||| Sbjct 1716795 CATGCTCGGAGAAAAACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGA 1716736 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | |||||||||| || ||||| Sbjct 1716735 AGAACTCTTTATGGTTTCGGTGGTTAA 1716709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061618883822