Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq146 113 4e-20 seq128 96.9 3e-15 >seq146 Length=1436832 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| || ||||| ||||| || ||||| || | ||||| | || || ||| | Sbjct 56354 AATGCAGGTCTTTGTCAAAACCTTGACTGGCAAGACTATTACACTTGAGGTTGAGAGCTC 56413 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | || || |||||| |||||||| ||||| ||||| || || Sbjct 56414 CGACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCA 56473 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATA 24168 || || |||||| | || ||||| | ||||||| || || | || |||||| | Sbjct 56474 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAG-GACATTAGCCGATTACA 56532 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 | ||||| || ||||| || ||||| | ||||| ||| | || ||||| Sbjct 56533 ATATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGACTCAGGGGAGG 56581 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | |||||||| | || ||| |||| || || | Sbjct 47239 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 47298 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || || || ||||| |||||||| || || || || Sbjct 47299 GACACCATTGACAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 47358 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | | |||||||||||| ||||| | | | | | || ||||| ||| Sbjct 47359 CAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTACAAC 47418 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || || |||| || ||| Sbjct 47419 ATTCAAAAAGAGTCCACTCTTCACTTGGTG 47448 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 ||||| || ||||||||||||||||| ||||| ||||||||||||| | || || || Sbjct 797291 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 797350 Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | | ||||||| ||| | | ||||| |||||||| |||||||| || ||||| | Sbjct 797351 ATTGGAAGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCT 797410 Query 24197 AGTGTTAAGATTGAGAGGAGGA 24218 || | || | || |||||| Sbjct 797411 TGTTCTGAGGCTCAGGGGAGGA 797432 >seq128 Length=1543362 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | || ||||| | || || | || |||||| Sbjct 1026348 ATGCAGATCTTTGTTAAGACACTCACCGGAAAGACCATCACTCTTGAGGTCGAGAGTTCT 1026289 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | |||||| |||||| ||||| |||||||| ||||| |||||| Sbjct 1026288 GACACCATTGATAATGTCAAAGCTAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 1026229 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGTCAGC-GATTATA 24168 ||||| ||||| | | || || || || ||||||| | ||| || | || ||||| | Sbjct 1026228 CAGAGGCTGATCTTTGCTGGGAAACAGCTTGAAGATGGCCGAACACTT--GCTGATTACA 1026171 Query 24169 ACATTCAAAAAGAATCTAC 24187 | || |||||||| ||||| Sbjct 1026170 ATATCCAAAAAGAGTCTAC 1026152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429858167342370