Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq146 104 2e-17 seq128 86.0 5e-12 >seq146 Length=1436832 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| ||||| || || ||| |||| ||| | Sbjct 47239 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 47298 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||||| || || |||||| | ||| || || Sbjct 47299 GACACCATTG-ACAACGTTAAGGCTAAAATCCAGGACAAGGAAGGCATTCCCCCAGACCA 47357 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| ||||| ||| | ||||| | | ||| | || ||||| || Sbjct 47358 GCAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTACAA 47417 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||||| ||| | || ||||| Sbjct 47418 CATTCAAAAAGAGTCCACTCTTCACTTGGTG 47448 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || |||||||| ||| Sbjct 797298 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAA 797357 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| |||| ||||| |||||||| ||||| || ||| | ||| | || || Sbjct 797358 GATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCTG 797417 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 797418 AGGCTCAGGGGAGGAA 797433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || || | || || || || |||||| | || ||| | | Sbjct 48151 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 48210 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| || ||||| || |||| ||||| Sbjct 48211 GACACCATTG-ACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCA 48269 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| ||||| ||||| ||||||| | || | |||||||| || Sbjct 48270 GCAAAGGTTGATTTTTGCTGGCAAGCAATTGGAAGATGGAAGGACATTAGCCGATTACAA 48329 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || || || || | ||| | |||||||| Sbjct 48330 TATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAG 48365 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| || || || ||||| ||||| ||||| ||||| ||| | || || || || Sbjct 55671 ATGCAGATCTTCGTGAAAACCCTCACAGGAAAGACCATCACCCTTGAGGTAGAAAGTTCA 55730 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | |||| ||| |||| || ||| || || || || ||||| | ||| |||| Sbjct 55731 G--ACACCATTG-ACAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCTGAT 55787 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||||||||| || | ||| || ||||| | ||||||| |||| | || ||||| Sbjct 55788 CAGCAAAGACTGATCTTTGCAGGGAAACAGCTCGAAGATGGTCGAACCCTCGCTGATTAC 55847 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| || || ||||| || Sbjct 55848 AACATCCAGAAGGAGTCCAC 55867 >seq128 Length=1543362 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| || |||||||| || || || ||||| ||||| ||| | ||| || || || Sbjct 1025892 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 1025833 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || || |||||| ||||| ||||| | || || Sbjct 1025832 GATACAATT---GACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGAC 1025776 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| ||||| ||| | || |||| | ||| |||| || || Sbjct 1025775 CAGCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTAC 1025716 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 || ||||| ||||||||||| ||||| Sbjct 1025715 AATATTCAGAAAGAGTCTACCTTACAT 1025689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425266998646480