Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq312 102 7e-17 seq74 91.5 1e-13 seq146 87.8 1e-12 >seq312 Length=758973 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || ||||||||||| || ||||||||||| || Sbjct 42088 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 42147 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||||| || || | || | || ||| ||||| || Sbjct 42148 AGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 42207 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 42208 ATACCCTCCTTGTCTTGGATCTTGGC--CTTAACATTGTCAATGGTGTCGGAGCTCTCAA 42265 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || ||||| || || || |||||||||||||| Sbjct 42266 CCTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 42314 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || ||||||||||| || | ||| | ||||| Sbjct 42559 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCC 42618 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||||||| || || || | || | || ||| ||||| || | ||||| || || Sbjct 42619 TCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCC 42678 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| | ||| |||| ||||||| Sbjct 42679 TGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGG 42736 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || || || || || |||||||| Sbjct 42737 TCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 42770 >seq74 Length=2020511 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || || |||||||| || ||||||||||| ||| Sbjct 552983 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 553042 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | || ||||| || |||| | || ||| ||||| || Sbjct 553043 AGAGTGCGGCCATCCTCGAGCTGCTTGCCTACAAAAATCAACCTCTGCTGGTCTGGGGGA 553102 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 553103 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACATTGTCAATGGTGTCGGAGTTCTCAA 553160 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCA 16934 |||| |||||||| ||| ||||| || || || ||||| ||||||| Sbjct 553161 CCTCCAGGGTGATGG-TTTCCCGGTAAGGGTCTTAACAAAGATCTGCA 553207 >seq146 Length=1436832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||||||||| ||||||||||| |||| || | | || || | || Sbjct 48581 TGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGC 48522 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| |||||| || | ||||| ||||| ||| | Sbjct 48521 TTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGAATCTTA 48462 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || || |||| |||| ||||||||||| || ||| Sbjct 48461 GCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTC 48402 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||||||||| Sbjct 48401 AAGGTCTTCACAAAAATCTGCAT 48379 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| || ||||||||||| ||||||||||| |||| || | | || || | || Sbjct 56785 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCGAGCTGC 56726 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| ||||| || | ||||| ||||| ||| | Sbjct 56725 TTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGAATCTTG 56666 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||| || |||| |||| ||||||||||| || ||| Sbjct 56665 GCCTTCACGTTGTCAATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTC 56606 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||||||||||||| Sbjct 56605 AAGGTCTTGACAAAAATCTGCAT 56583 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||| ||||| |||||||| || || | ||| | |||| Sbjct 47450 AGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCT 47391 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||| ||||| ||| | || |||| || ||||| || | ||| || ||||| Sbjct 47390 TCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 47331 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 |||| ||| || | | | | ||||| | ||| || | |||||| || Sbjct 47330 TGGATTTTAGCCTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTC 47271 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||||||||| |||||||| Sbjct 47270 TTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 47239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405014665653460