Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 190 2e-43 seq91 93.3 5e-14 seq50 89.7 6e-13 seq223 87.8 2e-12 seq135 87.8 2e-12 seq816 84.2 2e-11 seq729 84.2 2e-11 seq202 84.2 2e-11 seq146 84.2 2e-11 seq69 84.2 2e-11 seq20 84.2 2e-11 seq10 84.2 2e-11 seq380 82.4 8e-11 seq61 82.4 8e-11 seq42 82.4 8e-11 seq8 82.4 8e-11 >seq4 Length=4469570 Score = 190 bits (210), Expect = 2e-43 Identities = 587/893 (66%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || || || ||||||||| | || ||||||||||| ||||| |||| | ||| Sbjct 3869365 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 3869306 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||||| || || || ||| ||| ||| | | ||| Sbjct 3869305 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 3869246 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 ||||||||||| |||||||||||||| | | ||||||||| | |||||| || | ||| Sbjct 3869245 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 3869186 Query 92981 CGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||| || ||||| || || ||| || | || || | || || ||| | || Sbjct 3869185 -GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAAT 3869127 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCAA 93098 | | | |||| || | || || || | | || |||| | || ||||||| Sbjct 3869126 TCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCAA 3869068 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || || ||||||||||||| ||| || |||||||| ||| ||||| || || | Sbjct 3869067 AATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCA 3869008 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 | || ||||| || | ||||||||| ||| || || || || || || |||| Sbjct 3869007 TTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTT 3868948 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | || ||||| ||||| | || || || || || ||||| | | ||||| Sbjct 3868947 CAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAACCATCG---ATCCAAC 3868891 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | ||||| | || || || | || |||||| | || ||||| || || | | Sbjct 3868890 GAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAATT 3868831 Query 93339 AATCTCGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 ||| | |||| ||||| |||||| | || | | || | ||||| || ||| Sbjct 3868830 TG-CTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAA 3868772 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 |||| |||||| || || |||||||| || |||||| | || || | | ||| || Sbjct 3868771 TGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACA 3868712 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 |||| || || | |||| || || || || || || || || ||||| || Sbjct 3868711 TCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAGAAG 3868652 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG-GATAG 93576 || | | ||| | || |||||| | ||| | | | || || ||||| | ||| Sbjct 3868651 GCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATT- 3868593 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| || |||||||||||||| || ||||| || ||||| ||||| |||||||| Sbjct 3868592 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 3868533 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 3868532 TTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 3868481 Score = 91.5 bits (100), Expect = 2e-13 Identities = 87/109 (80%), Gaps = 7/109 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2129452 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2129509 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA-ATTATTATTGGAATTTTTGTT 126369 ||||||||| || ||||| ||||||| ||| || ||| | |||||| Sbjct 2129510 CGTGGGTTCAAATCCCACTTCTGACAATATTTTTTTTGTTTTGTTTGTT 2129558 >seq91 Length=1815226 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/102 (81%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1806746 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1806689 Query 126325 GGGTTCGAACCCCACACCTGACAAA-TTATTATTGGAATTTT 126365 |||||| || |||||| ||| |||| || ||||| |||||| Sbjct 1806688 GGGTTCAAATCCCACAGCTGTCAAATTTTTTATTTTAATTTT 1806647 >seq50 Length=2324169 Score = 89.7 bits (98), Expect = 6e-13 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 1453833 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 1453774 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT-TATTATTGGAATTTTT 126366 |||||||| || ||||| ||||||||| | ||||| |||||| Sbjct 1453773 GTGGGTTCAAATCCCACTTCTGACAAATGTTTTATTTTTATTTTT 1453729 >seq223 Length=1071188 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 721898 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 721957 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 721958 GTGGGTTCAAATCCCACTTCTGACA 721982 >seq135 Length=1498384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 566774 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 566715 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| || ||||| |||||||| |||| || Sbjct 566714 GTGGGTTCAAATCCCACTTCTGACAAAATATTTTT 566680 >seq816 Length=92561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 6/103 (6%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 43153 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 43210 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTG 126370 ||| || |||||| ||| || ||| || | |||||| ||| Sbjct 43211 TTCAAATCCCACAGCTGTCATATTTTTTT----ATTTTTTTTG 43249 >seq729 Length=154361 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 5/111 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 121799 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 121858 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGG 126373 |||||||| || ||||| |||||| | ||||| | ||||| || ||| Sbjct 121859 GTGGGTTCAAATCCCACTTCTGACA---TTTTATTTTAGTTTTTTTTTCGG 121906 >seq202 Length=1148858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 165962 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 166021 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||| || ||||| |||||||| || Sbjct 166022 GTGGGTTCAAATCCCACTTCTGACAAAATA 166051 >seq146 Length=1436832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1043965 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1044022 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| || ||| |||| Sbjct 1044023 GGGTTCAAATCCCACAGCTGTCATTTTAATATT 1044055 >seq69 Length=2089258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 1503452 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 1503393 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 |||||||| || ||||| ||||| ||| || ||| |||| || Sbjct 1503392 GTGGGTTCAAATCCCACTTCTGAC--ATTTTTTTTGAAATTATT 1503351 >seq20 Length=3188724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 1913303 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 1913362 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||| || ||||| |||||| || ||||| | |||| Sbjct 1913363 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTTTATTTTT 1913405 >seq10 Length=3946082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/97 (80%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 2772302 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 2772359 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||| || ||||| ||||| |||||| || Sbjct 2772360 GCGTGGGTTCAAATCCCACTTCTGAC--ATTATTTTT 2772394 >seq380 Length=569987 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 109576 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 109633 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||||| Sbjct 109634 TTCAAATCCCACAGCTGTCATTTTATT 109660 >seq61 Length=2177692 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/93 (81%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 838524 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 838581 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| | ||| ||||| Sbjct 838582 GGGTTCAAATCCCACAGCTGTC--ATTTTTATT 838612 >seq42 Length=2527457 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1005557 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1005500 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 1005499 TTCAAATCCCACAGCTGTCAATTTTTT 1005473 >seq8 Length=4063183 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2854656 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2854599 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| ||| || Sbjct 2854598 TTCAAATCCCACAGCTGTCAACTT 2854575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556757404870960