Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq146 104 2e-17 seq128 100 2e-16 seq8 86.0 4e-12 >seq146 Length=1436832 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || ||||| || |||||| | || |||| | | Sbjct 48151 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 48210 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| ||| ||| || ||||||||| | || | | || Sbjct 48211 GACACCATTGACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCAG 48270 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||||||||| ||| | |||||| || || | |||||||||||| Sbjct 48271 CAAAGGTTGATTTTTGCTGGCAAGCAATTGGAAGATGGAAGGACATTAGCCGATTACAAT 48330 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||||||||| || |||||| | || || Sbjct 48331 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 48362 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| | ||| | ||||| || || ||||| || ||||| | || || | | Sbjct 56354 AATGCAGGTCTTTGTCAAAACCTTGACTGGCAAGACTATTACACTTGAGGTTGAGAGCTC 56413 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || ||||| || ||| || |||||||| | ||| | |||| Sbjct 56414 CGACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCA 56473 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || || | || |||||||| || || | |||||| || || | ||||||||||| Sbjct 56474 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 56533 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||||||| || |||||| | || || Sbjct 56534 TATTCAGAAGGAATCGACCCTTCATCTTGTGTT 56566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| | ||| | |||| |||||||| |||||||| || ||||| || ||| Sbjct 55992 GACAAGGAGGGCATCCCTCCAGACCAGCAGAGACTGATCTTTGCCGGAAAACAGCTTGAA 56051 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| | || ||||||||||| |||||||| || |||||||| |||| | Sbjct 56052 GATGGCCGTACTCTCGCTGATTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTC 56111 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 56112 CGTCTCCGCGGTGG 56125 >seq128 Length=1543362 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||||| || || || || ||||| |||| || || Sbjct 1025664 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1025605 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || || || |||||| | ||| | |||| Sbjct 1025604 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1025545 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 1025544 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1025485 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 1025484 ATTCAGAAAGAATCAACCCTGCA 1025462 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || || ||||| ||| | ||| ||| || Sbjct 1025892 ATGCAGATCTTTGTCAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 1025833 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| |||||| ||||| || || | ||| | |||| Sbjct 1025832 GATACAATTGACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 1025773 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| ||||| ||||| || ||| || || |||| || |||||| Sbjct 1025772 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGACTACAAT 1025713 Query 22014 ATTCAGAAGGAATCTAC 22030 |||||||| || ||||| Sbjct 1025712 ATTCAGAAAGAGTCTAC 1025696 >seq8 Length=4063183 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| || || || || || |||||| | || ||| | || Sbjct 1948746 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTCGAGGTTGAAAGCTCA 1948805 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||||||| || || ||||| | ||| | |||| Sbjct 1948806 GACACTATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 1948865 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || ||||| || ||| ||| | || || |||||| Sbjct 1948866 CAAAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCTGACTACAAT 1948925 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || || || || | || | ||| | ||||| || Sbjct 1948926 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGTCTGCGAGGTGG 1948972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358059967548316