Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 127 4e-24 >seq4 Length=4469570 Score = 127 bits (140), Expect = 4e-24 Identities = 347/527 (66%), Gaps = 16/527 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| |||||||| |||||||| || |||||||| || ||||||||| Sbjct 3868647 CTTGCCTTCTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCTGGAAGGTTCATG 3868706 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || ||| ||||||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 3868707 AAAGATGTCCAGGTTGCTGAGGCGCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 3868765 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | || || ||| ||||| ||| | | ||||||| |||| | | ||| Sbjct 3868766 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATAAAGGATTCTGACGA--- 3868822 Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | || ||||| || || ||||| || || || | | ||||||||| | | Sbjct 3868823 -AAAGAGCAAATTGTTCCGTGCAATCGAGACCATCCCTTGTGTTGAAAAGAAGGCGAAAT 3868881 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || |||||||| || |||| ||| |||| ||| | |||| || ||| Sbjct 3868882 GGGCCCTTCGTTGGATCGATGGTTCCGA---AACCTTCGCGGAGCGCTTGGTGGCTTTTG 3868938 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || || |||||| || |||| || || || ||| | || | Sbjct 3868939 CTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAAC 3868998 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| ||| | |||||||| || || | || || ||||| || ||| Sbjct 3868999 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 3869058 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | || ||||| || | || | | || || ||| |||| | |||||| Sbjct 3869059 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 3869115 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 | ||| ||| || || | || || |||||||| || | ||||||| Sbjct 3869116 GAGTCAGGGGAATTATTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 3869162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944163859819040