Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq128 129 6e-25 seq104 105 7e-18 seq10 100 3e-16 seq112 95.1 1e-14 seq146 93.3 4e-14 seq8 89.7 5e-13 >seq128 Length=1543362 Score = 129 bits (142), Expect = 6e-25 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || |||| ||||||||| || ||||| | |||||||||| || ||||| ||||| ||| Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | | |||||| ||||||||||| | | |||| | |||||| ||||| || || Sbjct 1025042 -AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1025100 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || ||||| ||| | |||| ||| | ||| || | ||| || | ||| Sbjct 1025101 AATACCCTCCTTGTC-TTGAATCTTTGCTTTGACGTTG-TCAATGGTATCTGAACTCTCA 1025158 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | || || ||||||| ||| || |||||||| |||||| Sbjct 1025159 ACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 1025209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || || || || || ||||| || | | Sbjct 1025927 GACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCA 1025986 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || |||||||| ||||| ||| |||| | ||| | Sbjct 1025987 AAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTTGAC 1026045 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | || | || || || ||||||||||| Sbjct 1026046 ATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTT 1026105 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 1026106 AACAAAGATTTGCAT 1026120 >seq104 Length=1719749 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | |||||| ||||| || || || |||| Sbjct 292582 TTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGG 292523 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | |||||| ||||| || || || ||||| ||||| ||| || ||| | Sbjct 292522 CGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGA 292463 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||||| ||||| ||||| | || | ||| || || || || ||| Sbjct 292462 CATTG-TCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTT 292404 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 292403 TTCACGAAGATCTGCAT 292387 >seq10 Length=3946082 Score = 100 bits (110), Expect = 3e-16 Identities = 143/194 (74%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||| ||||||||||| || ||| | |||||| || ||||| || || |||| | Sbjct 3853638 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 3853580 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540 ||| | ||||| |||||||| || |||||||| ||||| ||| | || | ||| || Sbjct 3853579 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 3853521 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| |||| || || |||| || | ||| || || || |||||||| Sbjct 3853520 TG-TCAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTC 3853462 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3853461 ACGAAGATCTGCAT 3853448 >seq112 Length=1653863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||||| Sbjct 814999 GACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGTCCATCCTCGAGCTGCTTACCGGC 814941 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||| ||||| || || || ||||| ||||| ||| | || | ||| Sbjct 814940 GAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTAA 814882 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 814881 CATTG-TCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 814823 Query 138598 TTTACAAAAATCTGCAT 138614 |||||||| |||||||| Sbjct 814822 TTTACAAAGATCTGCAT 814806 >seq146 Length=1436832 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||||| || |||||||| || Sbjct 48149 CCACCACGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 48090 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | |||| | | ||| ||||| || || Sbjct 48089 AGGGTCCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 48030 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | ||| |||| || | |||||| | |||| Sbjct 48029 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTG-TCAATGGTGTCAGAACTTTCCA 47972 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| || || ||||| || ||||| Sbjct 47971 CCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 47923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| |||||||||||||| || | || || ||| || ||||| || |||| | Sbjct 47432 GACTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCA 47373 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | || ||||| || || || ||||| ||||| || |||| | |||| Sbjct 47372 AAGATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTC-CTGGATTTTAGCCTTAAC 47314 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | |||||||||| || | || || ||||| || |||| Sbjct 47313 GTTG-TCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCAGTGAGGGTTT 47255 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 47254 TGACAAAGATCTGCAT 47239 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | || || || || || || | | Sbjct 48572 GACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCA 48513 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || | ||| |||||||| || || || || ||||| ||| | || | || Sbjct 48512 AAGATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCAC 48454 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||||||| | || | ||||| ||||||| || | Sbjct 48453 ATTG-TCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCT 48395 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 48394 TCACAAAAATCTGCAT 48379 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||| || | |||||| || || || ||||| |||| | Sbjct 56092 GACTCCTTCTGGATATTGTAATCAGCGAGAGTACGGCCATCTTCAAGCTGTTTTCCGGCA 56033 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||| ||||| || || || ||||| ||| || | |||| Sbjct 56032 AAGATCAGTCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTA-GCCTTAAC 55974 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | |||||||| | || | |||||| ||||| || || | Sbjct 55973 GTTGT-CAATGGTGTCTGAACTTTCCACCTCAAGGGTGATCGTTTTCCCAGTGAGGGTCT 55915 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 55914 TGACGAAAATCTGCAT 55899 >seq8 Length=4063183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||| ||||||||||| ||| | ||| | ||||| | |||||||||| Sbjct 1948711 GACTCCTTTTGGATGTTGTAGTCAGCT-AGAGTTCTTCCATCCTCCAACTGTTTACCGGC 1948653 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| | | ||| || || ||||| || ||||| || || ||||||| || | Sbjct 1948652 AAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTTGCCTTGAC 1948593 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||| ||||| | || | || || ||||||| |||| Sbjct 1948592 ATTG-TCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATTGTCTTCCCAGTCAAGGTTT 1948534 Query 138599 TTACAAAAATCTGCATG 138615 | ||||| ||||||||| Sbjct 1948533 TCACAAAGATCTGCATG 1948517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496170256478880