Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq128 120 2e-22 seq112 102 6e-17 seq8 98.7 7e-16 seq10 95.1 9e-15 seq312 93.3 3e-14 seq146 89.7 4e-13 seq1 86.0 4e-12 >seq128 Length=1543362 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||| ||| | || || ||||| || || || || || || ||||| || || ||| Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | ||| |||| || | |||||| ||||| | ||||||||||| ||||| || Sbjct 1025042 -AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1025100 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||| || |||||||| ||| ||||| ||| || | || || ||||| | | || | Sbjct 1025101 AATACCCTCCTTGTCTTGAATCTTTGC-TTTGACGTTGTCAATGGTATCTGAACTCTCAA 1025159 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 1025160 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 ||||||||| | | | ||| | || ||||| || ||||| || ||||||||||| | Sbjct 1025208 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCTG 1025267 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | || | || | || || | ||| || ||||| | ||||| | ||| ||||| Sbjct 1025268 CCAAGG-TCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGG 1025326 Query 15067 GGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| ||| |||||||| || | || || ||||| | | || Sbjct 1025327 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTG-ACGTTGTCAATGGTATCTGAACTCTC 1025385 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || || |||| ||| || |||||||||||||| Sbjct 1025386 AACCTCCAAAGTAATTGTCTTCCCCGTCAAAGTCTTGACAAAAATTTGCAT 1025436 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAAT-CG 15006 ||||||||| | | | ||| | || ||||| || ||||| || |||||||||| || Sbjct 1025436 TGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCCG 1025495 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 | || | || | || || | ||| || ||||| | ||||| | ||| ||||| Sbjct 1025496 CCAAG-GTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 1025554 Query 15067 GGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| || ||||| ||| ||| | || |||||||| | | || Sbjct 1025555 GGAATACCCTCCTTGTCTTGGATCTTTGC-TTTAACATTGTCGATAGTATCTGAACTCTC 1025613 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || ||||||| || || ||||| |||||||| Sbjct 1025614 AACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1025664 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| ||||||||||| || ||| | ||||| | ||| Sbjct 1025918 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1025977 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| | ||| ||||| ||||| ||||||||||| |||||| Sbjct 1025978 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1026037 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || | || || || | || || || || || ||| Sbjct 1026038 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 1026097 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| |||||||| Sbjct 1026098 AGAGTTTTAACAAAGATTTGCAT 1026120 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| |||||||| |||||||| || |||||||| || ||| | ||||| | || Sbjct 1026145 ATGGAGGGTAGACTCTTTTTGGATATTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTG 1026204 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| ||||| | |||| | |||||| || ||||| ||||||||||| ||| || Sbjct 1026205 TTTCCCAGCAAAGATCAGCCTCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 1026264 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||| | || || || || | | || || || | || ||||| || || || Sbjct 1026265 AGCTTTGACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGT 1026324 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190 || || || ||||| || ||| || ||||||| ||| Sbjct 1026325 GAGTGTCTTAACAAAGATCTGC--ATCTGAAATATATT 1026360 >seq112 Length=1653863 Score = 102 bits (112), Expect = 6e-17 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || |||||||| || || || |||||||| || ||| || ||| | || || | || Sbjct 815008 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT-AGTGTTCGTCCATCCTCGAGCTG 814950 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| ||||| ||||| |||||| ||||||||||| ||| || Sbjct 814949 CTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 814890 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| | || || || || | || ||||| ||||||||||| || || || | Sbjct 814889 AGCCTTAACATTGTCAATGGTGTC-CGATGACTCTACCTCTAAGGTAATAGTCTTGCCCG 814831 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180 |||| || |||||||| || ||||| ||| Sbjct 814830 TCAGGGTCTTTACAAAGATCTGCATTTTT 814802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 || ||||| || || || || |||||||| || ||| || ||| | || || | || Sbjct 762767 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCT-AGCGTTCGGCCATCCTCGAGCTG 762825 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || || ||| | ||||| | ||| ||||| |||||| ||||||||||| ||| || Sbjct 762826 CTTTCCTGCGAAAATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTT 762885 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 || ||| | || || || || | || ||||| ||||||||||| || || || | Sbjct 762886 AGCCTTAACATTGTCAATGGTGTC-CGATGACTCTACCTCTAAGGTAATAGTCTTGCCCG 762944 Query 15152 TCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || || ||||| || ||||| ||| Sbjct 762945 TTAGGGTCTTCACAAAGATCTGCATTTTT 762973 >seq8 Length=4063183 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| || || || || ||||| ||||||||||| ||| ||| | || | || || Sbjct 1949182 ACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCTGCT-AGAGTCCTTCCATCCTC 1949124 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | ||||| | ||| ||||| ||| || |||||||| || Sbjct 1949123 AAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGTGGGATGCCTTCCTTATCTTG 1949064 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || || || | | || || || | ||| ||||| || Sbjct 1949063 AATTTTAGCCTTGACATTGTCGATGGTGTCAGAACTCTCAACCTCAAGGGTGATGGTCTT 1949004 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||||| || || |||||||| |||||| Sbjct 1949003 CCCTGTCAATGTCTTCACAAAAATCTGCATA 1948973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | || | || ||||| || || || || ||||| || || Sbjct 1948287 CCACCACGCAAACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCTGCA 1948228 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| |||| |||||||| || ||||| | |||| | || || || ||| Sbjct 1948227 AGAGTTCTACCGTCCTCTAATTGCTTTCCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 1948168 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||||| ||| ||||| || ||| | || || || || | | || || Sbjct 1948167 ATTCCTTCCTTGTCTTGAATCTTTGC-CTTAACATTATCGATTGTGTCAGAACTCTCAAC 1948109 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || || || || || ||||| |||||||| Sbjct 1948108 CTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCAT 1948061 >seq10 Length=3946082 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 14987 CTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 |||| || ||||||||||| ||| ||| | | | ||||| | || || || ||| | Sbjct 3853637 CTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAG 3853579 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||| ||||| |||||| ||||||||||| ||| || ||| ||| | Sbjct 3853578 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 3853519 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || ||||| ||||| ||| || || | || || || || || || |||||||| || Sbjct 3853518 TCAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTCACG 3853459 Query 15166 AAAATTTGCATATT 15179 || || ||||| || Sbjct 3853458 AAGATCTGCATTTT 3853445 >seq312 Length=758973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || ||||| |||||||| || || || ||||||||||| ||| ||| | | |||| || Sbjct 43018 ACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT-AGAGTACGTCCGTCCTC 43076 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || || ||| | || | | || || || |||||||||||||| || Sbjct 43077 CAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTG 43136 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || || | || || ||||| | |||| || |||| ||| ||||| || Sbjct 43137 AATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATGGTCTT 43196 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| ||||| || ||||| Sbjct 43197 TCCGGTGAGAGTTTTCACAAAGATCTGCAT 43226 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| || | | |||| || Sbjct 48131 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCGTCCTCA 48072 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || || | ||||| | ||| ||||| |||||| ||||| ||||| | Sbjct 48071 AGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGA 48012 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| | || || || || | |||| || || | |||||| || || Sbjct 48011 ATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTAATAGTCTTG 47952 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || ||||| |||||||| Sbjct 47951 CCAGTCAAGGTCTTCACAAAGATTTGCAT 47923 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || ||||||||||| ||| ||| | ||||| Sbjct 55879 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGGGTTCGACCATCTTCG 55820 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||| || || | |||| | || || || ||||| ||||||||||| Sbjct 55819 AGCTGTTTCCCTGCAAAGATCAGTCTTTGCTGATCAGGGGGAATCCCTTCCTTGTCCTGG 55760 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || | ||||||| || | ||| ||||| || Sbjct 55759 ATCTTGGCTTTGACATTGTCAATGGTGTCTGAACTTTCTACCTCAAGGGTGATGGTCTTT 55700 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || ||||| || || || ||||| Sbjct 55699 CCTGTGAGGGTTTTCACGAAGATCTGCAT 55671 >seq1 Length=7090834 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || | || ||||| || ||||||||||| ||| | || | || || Sbjct 277515 ACCAAATGGAGTTTGGACTCTTTCTGGATGTTGTAATCAGCAAGAGTCCTACCATCCTCA 277574 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||||| | || ||||| || |||| | |||||||||||| ||||| Sbjct 277575 AGCTGTTTGCCAGAAAAAATTAAACGTTGCTGGTGCTCTGGAATTCCTTCTTTGTCTTGG 277634 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTT 15146 || || | || ||| | || | ||||| ||| ||||||| |||| ||| || || || Sbjct 277635 ATCTTTGTCTTCACATTATCAGTGGTATC-TTATCTTTCTACCTCTAGGGTGATTGTCTT 277693 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || ||||| || |||||| Sbjct 277694 CCCGGTCAATAGCTTAACAAAGATCTGCATA 277724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357327300209390