Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 84.2 3e-11 >seq4 Length=4469570 Score = 84.2 bits (92), Expect = 3e-11 Identities = 294/456 (64%), Gaps = 5/456 (1%) Strand=Plus/Minus Query 159923 CACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGG 159982 |||||||| || ||||||| || ||||| | || || ||||| || || | | | | Sbjct 3869074 CACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAAT 3869015 Query 159983 CCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAA 160041 || ||||| | ||| || ||| | |||||| || | || |||| ||||| || || Sbjct 3869014 CCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAA-CAGAAGCTTCCGCTGAAGAA 3868956 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||||| || || ||||| ||||| | | ||| | || || | || ||| Sbjct 3868955 AATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAA---GGTTTCGGAACCATC 3868899 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 | |||| | |||||||| ||||||||| | | || || ||| ||||| || Sbjct 3868898 GATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACG 3868839 Query 160162 AAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACAT 160221 |||||| || || || | |||||| || | | | |||| |||||| Sbjct 3868838 GAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACAT 3868779 Query 160222 TTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA 160281 || | || | ||| || ||||| || || || |||||| |||||| | Sbjct 3868778 CTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAAC 3868719 Query 160282 CTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGC 160341 ||| || || | |||||||| | | || || | ||| | ||||| | ||| || Sbjct 3868718 CTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGC 3868659 Query 160342 AAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTC 160377 |||||| || | ||| |||| |||||||||||| || Sbjct 3868658 AAAGAAGGCAAGCACATGAGTGATGAAATGTCTTTC 3868623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795007559558240