Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10 120 3e-22 seq146 116 4e-21 seq112 116 4e-21 seq104 116 4e-21 seq74 104 3e-17 seq128 102 9e-17 seq312 96.9 4e-15 seq8 89.7 6e-13 >seq10 Length=3946082 Score = 120 bits (132), Expect = 3e-22 Identities = 148/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||| ||||| || || ||||| || | |||||| || | || ||||||||||| ||| Sbjct 3853644 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 3853585 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||||||||| | || | | |||||||| ||||| ||| Sbjct 3853584 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 3853525 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||||||||||| || || | ||||| || || ||||| || ||| Sbjct 3853524 ACATTGTCAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTT 3853465 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||||||| Sbjct 3853464 TTCACGAAGATCTGCATTTTG 3853444 >seq146 Length=1436832 Score = 116 bits (128), Expect = 4e-21 Identities = 153/207 (74%), Gaps = 9/207 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||| |||| |||||| || |||| || ||||||||||| || || Sbjct 47202 CTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAA 47143 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 47142 GATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGT 47084 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | ||||| || || || || || |||| Sbjct 47083 TGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTT 47027 Query 46578 TAACAAAGATTTGCAT-TTTGCACAAA 46603 | |||||||||||||| | | |||||| Sbjct 47026 TGACAAAGATTTGCATCTGTACACAAA 47000 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || ||||| ||| |||||||||||| |||||||| | | ||| | | || ||| Sbjct 56791 ACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCG 56732 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| | ||||||||| | || | | |||||||||| Sbjct 56731 AGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGA 56672 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||| | ||| | | | || || ||| ||||| |||| |||||||| Sbjct 56671 ATCTTGGCCTTCA-CGTTGTCAATAGTATCAGAACTC---TCCACCTCCAAAGTGATGGT 56616 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| || || ||||| || ||||| Sbjct 56615 TTTCCCAGTCAAGGTCTTGACAAAAATCTGCAT 56583 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || | ||||| || | || || ||||| || ||||| || Sbjct 56090 CTCCTTCTGGATATTGTAATCAGCGAGAGTACGGCCATCTTCAAGCTGTTTTCCGGCAAA 56031 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||||||| |||||| ||| | ||| Sbjct 56030 GATCAGTCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTT-AACGT 55972 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| |||||| || | ||||| ||||| || || || || || | Sbjct 55971 TGTCAATGGTGTCTGAACTTTCCACCTCAAGGGTGATCGTTTTCCCAGTGAGGGTCTTGA 55912 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 55911 CGAAAATCTGCAT 55899 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||| || ||||| || | || || || |||| || || ||||||||||| || Sbjct 47430 CTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCAAA 47371 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||||| | || | || ||||||||| ||| || ||| | ||| Sbjct 47370 GATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTT-AACGT 47312 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | ||||| || || || || || |||| Sbjct 47311 TGTCAATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCAGTGAGGGTTT 47255 Query 46578 TAACAAAGATTTGCAT 46593 | |||||||| ||||| Sbjct 47254 TGACAAAGATCTGCAT 47239 >seq112 Length=1653863 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || ||||||||||| |||||||| Sbjct 814997 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCGAGCTGCTTACCGGCGAA 814938 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||| ||||| ||| | | Sbjct 814937 AATCAATCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 814878 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || ||||||||||| || || || Sbjct 814877 GTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTTAC 814818 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 814817 AAAGATCTGCATTTTTCAC 814799 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || ||||||||||| || ||||| Sbjct 762778 CTCCTTCTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTTCCTGCGAA 762837 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| ||||| ||| | | Sbjct 762838 AATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTAACATT 762897 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || |||||||| || || || || Sbjct 762898 GTCAATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 762957 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 762958 AAAGATCTGCATTTTTCAC 762976 >seq104 Length=1719749 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || | Sbjct 292602 ACGGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 292543 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 292542 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 292483 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||| | | | |||||| || || || || | ||||| Sbjct 292482 GTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 292423 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || ||||| || ||||| || ||||| ||||| || Sbjct 292422 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 292384 >seq74 Length=2020511 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| | || ||||||||||| || ||||| Sbjct 553233 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCGAA 553292 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | | ||||||||| |||||| ||| | | Sbjct 553293 GATCAACCTCTGCTGGTCTGGGGGAATCCATTCCTTGTCCTGGATCTTAGCCTTCACATT 553352 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| |||||| |||| |||||||| | || || || | ||||| Sbjct 553353 ATCAATGGTGTCGGAACTTTCCACCTCCAAAGTGATGGTCCTTCCTGTGAGGGCCTTAAC 553412 Query 46582 AAAGATTTGCAT 46593 ||| || ||||| Sbjct 553413 AAAAATCTGCAT 553424 Score = 102 bits (112), Expect = 9e-17 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | || ||||| || | ||| |||||| || || |||||||| | Sbjct 552983 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGCC 553042 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || |||||||||||||| | || ||||| | ||||||||| | || Sbjct 553043 AGAGTGCGGCCATCCTCGAGCTGCTTGCCTACAAAAATCAACCTCTGCTGGTCTGGGGGA 553102 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| | | | |||||| || || Sbjct 553103 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGTTCTCAACC 553162 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCA 46592 |||| ||||||| ||| || || || || ||||||||||| |||| Sbjct 553163 TCCAGGGTGATGG-TTTCCCGGTAAGGGTCTTAACAAAGATCTGCA 553207 Score = 100 bits (110), Expect = 3e-16 Identities = 162/228 (71%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | || ||||| | ||| |||||| ||||| |||||| | | Sbjct 553654 CCACCACGTAGACGGAGAACGAGATGGAGGGTAGACTCCTTCTGGATG--GTAGTCAGCT 553711 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || ||||||||||| || ||||| ||||| | ||||||||| | || Sbjct 553712 AGGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 553771 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || ||||| || |||||| ||| | ||| | | | |||||| |||||| Sbjct 553772 ATCCT-TCCTTATCTTGGATCTTAGCCTTCA-CGTTGTCAATGGTGTCGGATCTTTCCAC 553829 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || || || || ||||| ||||| ||||| Sbjct 553830 CTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 553877 >seq128 Length=1543362 Score = 102 bits (112), Expect = 9e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||||||||| ||| | || |||||| ||||| || ||||| | | Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | |||| || || || || || || || ||||| ||||||||||| | || Sbjct 1025042 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1025101 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 46544 | | ||||||||| ||||| | ||| ||| | || | || || | || | Sbjct 1025102 ATACCCTCCTTGTCTTGAATCTT-TGCTTTGACGTTGTCAATG-GTATCTGAACTCTCAA 1025159 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || || || || |||| || || ||||| |||||||| Sbjct 1025160 CCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 >seq312 Length=758973 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/198 (72%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||||| || ||||| | || || |||||||| || || || Sbjct 41895 CTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAA 41954 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 ||||| | ||||||||| | || | | |||||||||| ||||| ||| | Sbjct 41955 GATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATT 42014 Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 |||| | ||||| ||| ||||| |||| |||||||| || || || | || Sbjct 42015 GTCG--ATGGTGTCAGAACTC---TCCACCTCCAAGGTGATGGTCTTCCCGGTTAAGGTC 42069 Query 46577 TTAACAAAGATTTGCATT 46594 || |||||||| |||||| Sbjct 42070 TTCACAAAGATCTGCATT 42087 >seq8 Length=4063183 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | ||||| ||| | ||| ||| || ||||||||||| || | Sbjct 1949428 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 1949369 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || ||||||||||| || || || || ||||||||||| | || Sbjct 1949368 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 1949309 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| ||| | | | | ||||| ||| || Sbjct 1949308 ATCCCTTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTTTCTACC 1949249 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || |||| || || ||||| || ||||| Sbjct 1949248 TCCAGGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1949202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565133449360080