Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 8e-15 seq312 89.7 4e-13 seq128 87.8 1e-12 seq146 84.2 2e-11 seq74 84.2 2e-11 >seq8 Length=4063183 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || |||||||| | ||| ||||| || ||||| ||||| || Sbjct 1949428 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 1949369 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | || || || ||||||||||||||||||| || | || Sbjct 1949368 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 1949309 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || ||| || | | | | ||||||| ||||| || Sbjct 1949308 ATCCCTTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTTTCTACC 1949249 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || ||||| || || || || || || || || |||||||| Sbjct 1949248 TCCAGGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1949202 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || || | || | ||| || ||||| || || || || || Sbjct 1948745 GCCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCAGC 1948686 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| ||||| ||||| ||| |||| || || | ||||||||| | || Sbjct 1948685 TAGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGG 1948626 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| || || |||||| || | | ||| || ||||| | ||| || Sbjct 1948625 AATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATA--GTGTCAGAGCTCTCA 1948568 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | ||||||||| || || || || ||||| || |||||||||||| Sbjct 1948567 ACCTCAAGAGTAATTGTCTTCCCAGTCAAGGTTTTCACAAAGATCTGCATG 1948517 >seq312 Length=758973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || || || || || || || || || Sbjct 42772 CCACCACGGAGACGGAGGACCAAATGTAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 42831 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| |||||||| |||| || || | |||||| || | ||| Sbjct 42832 AGGGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 42891 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||| || || || || |||| | | | ||||||| |||||| || Sbjct 42892 ATGCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCTGAGCTTTCGACC 42951 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || |||||||| | ||| || |||||||||||||| Sbjct 42952 TCAAGGGTAATCGTCTTACCCGTAAGAGTCTTAACGAAGATCTGCAT 42998 >seq128 Length=1543362 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||||| |||||||| | ||| || || || || ||||| | Sbjct 1024978 CATC-CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGT 1025036 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | | || || | |||||| || |||| || ||||||||||| || | Sbjct 1025037 CTGCTAGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTG 1025096 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 ||| | || || ||||| || ||| ||| | ||| | | | || |||| || Sbjct 1025097 GGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTGA-CGTTGTCAATGGTATCTGAACTC 1025155 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || ||||| |||||||| || || || ||||| || || || || |||||| Sbjct 1025156 TCAACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 1025209 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 |||||| || || || ||||| ||||| | | |||| || | ||| || || |||| Sbjct 1025245 TTCTTTCTGAATGTTGTAATCTGCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAA 1025304 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 || || | |||||| || | ||| | || || ||||| || ||| ||| | ||| Sbjct 1025305 GATCAATCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTGA-CGT 1025363 Query 39648 CGCTACTG-TGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | || | |||| || || || |||||||||||||| || ||||| ||||| || | Sbjct 1025364 TGTCAATGGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCCGTCAAAGTCTTGA 1025423 Query 39707 CGAAGATCTGCATG 39720 | || || |||||| Sbjct 1025424 CAAAAATTTGCATG 1025437 >seq146 Length=1436832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | |||| |||||||| || || ||||| || Sbjct 47465 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGCG 47406 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || || | ||| || ||| |||| || | | ||||| || | ||| Sbjct 47405 AGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 47346 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| ||||| ||||| |||| ||| | | || |||||| ||||||||| Sbjct 47345 ATGCCTTCCTTGTCCTGGATTTTAGCCTTAA-CGTTGTCAATGGTGTCTGAGCTTTCCAC 47287 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || ||||| || || || | ||||| || ||||||||||| Sbjct 47286 CTCGAGGGTGATTGTCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 47239 >seq74 Length=2020511 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || || || || || || || || || Sbjct 553879 CCACCACGGAGACGGAGCACCAAATGGAGGGTAGACTCGTTCTGGATGTTGTAGTCAGCT 553938 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| || ||||| |||| || || | |||||| || | ||| Sbjct 553939 AGGGTGCGGCCATCTTCCAACTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 553998 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| || || || || |||| ||| | | || |||||| |||||| || Sbjct 553999 ATGCCTTCCTTATCCTGGATCTTAGCCTTAA-CGTTGTCAATGGTGTCTGAGCTTTCGAC 554057 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || |||||||| ||| || |||||||||||||| Sbjct 554058 CTCAAGGGTAATCGTCTTACCCGTACGAGTCTTAACGAAGATCTGCAT 554105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347306714595782