Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq102 132 6e-26 seq32 113 5e-20 seq242 95.1 1e-14 seq4 93.3 5e-14 seq84 89.7 6e-13 >seq102 Length=1742045 Score = 132 bits (146), Expect = 6e-26 Identities = 308/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 801201 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 801260 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 801261 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 801318 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 801319 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 801376 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 801377 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 801436 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | | ||| Sbjct 801437 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA- 801495 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 801496 ATTGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 801555 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAAT-CTTGGCGCCACTTCCAAAGT- 9606 ||||| || ||| | || || |||| |||||| | | | ||||| | ||| Sbjct 801556 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGTA 801612 Query 9607 -ATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||||||||| ||| | ||| || || | ||| Sbjct 801613 AATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 801647 >seq32 Length=2710826 Score = 113 bits (124), Expect = 5e-20 Identities = 196/285 (69%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||||||| || |||||||| || || | |||||||| | Sbjct 1990071 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 1990016 Query 9342 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||||||| |||| | || ||||||| ||||||||||||||||| || ||| Sbjct 1990015 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 1989958 Query 9396 ATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCC 9451 ||||| || || |||| || | ||||| | ||| | ||| || || || Sbjct 1989957 ATACAAGGCGCTTTAGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCC 1989902 Query 9452 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9511 |||||| ||||||| ||| ||||| | || || | ||| || || || ||| || Sbjct 1989901 CACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGC 1989842 Query 9512 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || | |||| || | ||| ||||| || |||||||| Sbjct 1989841 CTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 1989797 >seq242 Length=1004679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||||||||| || ||| | |||| Sbjct 789027 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTTGTG 788968 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| |||||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 788967 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 788908 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 788907 CTTTTTCTATTGCAAGAATCCT 788886 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 787678 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 787619 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 787618 GACATCAACTGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 787559 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || | || | || || Sbjct 787558 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCT-GAATCTTTAAGAGGTA 787500 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 787499 AGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 787455 >seq4 Length=4469570 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 3869071 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 3869012 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 3869011 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 3868952 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG-AGCGAGACTTTGTGTCAAA 117452 || || ||||| ||||| || | | |||||| ||||||| || || | || || Sbjct 3868951 CCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAACCATCGATCCAA 3868892 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 | | | ||||||||||||||||| |||| ||| || Sbjct 3868891 CGA----AGGGCCCATTTCGCCTTCTTTTCAACACAAGG 3868857 >seq84 Length=1873685 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || ||||| || | |||||| ||||| || ||| | |||| Sbjct 701212 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 701271 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | |||||| ||||||||||| ||| ||| || || || | ||||| |||||| Sbjct 701272 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGTTGGTTG 701331 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| |||| || | ||||| Sbjct 701332 CTTTTTCTGTTACAAGTATCCT 701353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589871255314960