Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq312 122 6e-23 seq74 102 5e-17 seq8 102 5e-17 seq10 100 2e-16 seq146 98.7 6e-16 seq104 98.7 6e-16 seq128 93.3 3e-14 seq6 82.4 5e-11 >seq312 Length=758973 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| |||||||||| ||| || ||||||||||| ||||||| Sbjct 42086 TTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCG 42145 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || |||||||| || || || || | | ||||||||| | | Sbjct 42146 CAAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGG 42205 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| || || | || | || | ||||| Sbjct 42206 GAATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATGGTGTCGGAGCTCTCAA 42265 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || || || ||||| ||||| ||||||||| Sbjct 42266 CCTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCATA 42315 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | |||| | ||| |||| || ||||| || || ||||| Sbjct 41896 TCCTTCTGGATATTGTAGTCGGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAG 41955 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||||||| |||||| ||| || || Sbjct 41956 ATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCAC--AT 42013 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| ||| || || | ||| ||||| || || || | ||||| Sbjct 42014 --TGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCGGTTAAGGTCTT 42071 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 42072 CACAAAGATCTGCAT 42086 >seq74 Length=2020511 Score = 102 bits (112), Expect = 5e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| |||||||||| || || ||||||||||| ||||| | Sbjct 552981 TTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 553040 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 || | || |||| || ||||| || || |||| || | | ||||||||| | | Sbjct 553041 CCAGAGTGCGGCCATCCTCGAGCTGCTTGCCTACAAAAATCAACCTCTGCTGGTCTGGGG 553100 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| ||||| | || | || | ||||| Sbjct 553101 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGTTCTCAA 553160 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 | || | ||| |||| ||| || || || ||||| ||||||||||||| Sbjct 553161 CCTCCAGGGTGATGG-TTTCCCGGTAAGGGTCTTAACAAAGATCTGCA 553207 >seq8 Length=4063183 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||||||||| | |||| | || |||| |||||||| || || ||||| Sbjct 1949620 TCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAA 1949561 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||| || ||||||| || || || Sbjct 1949560 ATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGCCTTCAC--AT 1949503 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || || | ||| || || | ||| || || ||||| || || ||||| Sbjct 1949502 --TATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATCGTCTTTCCAGTAAGTGTCTT 1949445 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 1949444 GACAAAGATCTGCAT 1949430 >seq10 Length=3946082 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || || | || | ||| |||| || ||||| |||||||| || | Sbjct 3853637 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 3853578 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||| |||||||| | || | || |||||||| |||||| |||||| Sbjct 3853577 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 3853518 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | | ||||| |||| || || || || ||||| ||||| ||||| | Sbjct 3853517 CAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 3853458 Query 34972 AGATCTGCATATT 34984 |||||||||| || Sbjct 3853457 AGATCTGCATTTT 3853445 >seq146 Length=1436832 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| || || | |||| | || |||| || Sbjct 47903 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCATCCTCA 47844 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | || |||||||||| | || | || |||||||| Sbjct 47843 AGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 47784 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | || | || | ||||| || | ||| ||||| ||| Sbjct 47783 ATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 47724 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||||||| || || ||||| Sbjct 47723 CCGGTCAAAGTCTTCACGAAAATTTGCAT 47695 >seq104 Length=1719749 Score = 98.7 bits (108), Expect = 6e-16 Identities = 143/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| || Sbjct 292577 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 292518 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||| |||||||| ||||| |||||| || Sbjct 292517 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 292460 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | |||||| || | ||| || || || ||||| || || || Sbjct 292459 --TGTCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 292402 Query 34967 CACAAAGATCTGCATATTCG 34986 ||| ||||||||||| |||| Sbjct 292401 CACGAAGATCTGCATCTTCG 292382 >seq128 Length=1543362 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| | |||| | || |||| ||||||||||| || ||||| Sbjct 1024790 TCTTTCTGGATATTGTAGTCTGCAAGGGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAAG 1024849 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || || ||| | || | ||| |||||||| ||||| ||| || Sbjct 1024850 ATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 1024909 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || || || || |||||||||||| Sbjct 1024910 TCAATAGTGTCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACA 1024969 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1024970 AAGATCTGCAT 1024980 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || | | | | | | |||| || || || ||||| ||||| Sbjct 1025245 TTCTTTCTGAATGTTGTAATCTGCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAA 1025304 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||||||||| |||||| ||||||| Sbjct 1025305 GATCAATCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTT 1025364 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || |||||| || | || || || || ||||| | |||||| || Sbjct 1025365 GTCAATGGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCCGTCAAAGTCTTGAC 1025424 Query 34970 AAAGATCTGCAT 34981 ||| || ||||| Sbjct 1025425 AAAAATTTGCAT 1025436 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/195 (70%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || || || || || | ||| |||| |||| || |||||||| || ||||| Sbjct 1026158 TCTTTTTGGATATTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAG 1026217 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || || ||| | || | || |||||||| |||||| |||||| || Sbjct 1026218 ATCAGCCTCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGAC--AT 1026275 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || ||| ||| || || | || ||||| ||||| ||||| ||||| Sbjct 1026276 --TATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTT 1026333 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 1026334 AACAAAGATCTGCAT 1026348 >seq6 Length=4150974 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 || ||||| |||||||||||| | |||| | || |||| |||||||| || || ||||| Sbjct 2891962 TTATTTCTAAATGTTATAGTCAGCAAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAA 2891903 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||||||| | | | ||||||||||| ||||| || || || | Sbjct 2891902 AATCAACCTCTGCTGGTCTGGTAGGATACCCTCCTTGTCCTGAATCTCCTCCTTCAC--A 2891845 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | |||| || || | ||| || || | | | || || ||||| | | |||| Sbjct 2891844 T--TATCAATGGTATCTGAGTTCTCCACCTCCAAGATAATAGTCTTTCCAATCATTGTCT 2891787 Query 34966 TCACAAAGATCTGCAT 34981 | |||||||||||||| Sbjct 2891786 TGACAAAGATCTGCAT 2891771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324574830564912