Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 149 7e-31 seq242 107 2e-18 seq84 89.7 6e-13 >seq4 Length=4469570 Score = 149 bits (164), Expect = 7e-31 Identities = 563/874 (64%), Gaps = 11/874 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || ||||||| || |||||||||||||| || || | || | || || Sbjct 3869365 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAG-GCTAATCAG 3869307 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||| | |||| || || || | | || || | | Sbjct 3869306 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 3869247 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || ||||||| || ||| | |||||| ||| | |||||| || | | Sbjct 3869246 CAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAG 3869187 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| | || || |||||| | || || |||| ||||| Sbjct 3869186 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAAT 3869127 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGC 18965 |||| || ||| |||| || ||| | | | |||| |||||| || Sbjct 3869126 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAAC-TGTAAAG--CAAACACGC 3869070 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||| || | || |||||||| || || ||||| || || ||||| ||||| Sbjct 3869069 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 3869010 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| | || | |||||| ||||| ||||| ||| || ||| ||||| || || Sbjct 3869009 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 3868950 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || |||||||| || | | |||| | | || | || ||||| Sbjct 3868949 TTCAACACAAGCAAAAGCCACCAAGC--GCTCCGCGA-AGGTTTCGGAACCATCGATCCA 3868893 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| | |||||||||| ||||| || || ||||| || | | || | Sbjct 3868892 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAA 3868833 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || | ||| || | || | || | || ||||||||||| || || Sbjct 3868832 TTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGA 3868773 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| ||||| || || || || || || || || ||| | || || | | ||| || Sbjct 3868772 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGAC 3868713 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 || | || ||| | | | || || ||| || || || || ||||| || Sbjct 3868712 ATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAGAA 3868653 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | ||||| | || |||||| ||||| | || |||| | | ||| | | | | Sbjct 3868652 GGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATT 3868593 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| ||||| ||| |||||||| || ||||| ||||| ||| ||||| || ||||| Sbjct 3868592 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 3868533 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | |||| || || || || ||| Sbjct 3868532 TTCCCAAATCTGTGGATACTGAATTGGGAACATA 3868499 >seq242 Length=1004679 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | |||||||||||||| ||| | || | | ||| || ||||| || Sbjct 788091 ACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCC 788032 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||||||||| ||| |||| | ||| || | || Sbjct 788031 ATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGA 787972 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | |||||| ||||| |||||||| || Sbjct 787971 TACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATAT 787912 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 787911 GCCCTCAATACTATCATCTTTCAT 787888 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||||| |||||||||||||||| | ||||| | || | ||| | Sbjct 787667 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAACTG 787608 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | || ||||| || |||||| || || || || | |||||| | ||| | Sbjct 787607 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 787548 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||| || ||||| ||||| || | || || || || || || |||| | Sbjct 787547 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 787488 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 787487 GGTTTTGAAACCAAAGTA 787470 >seq84 Length=1873685 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||||||||| || | ||||| ||||| | ||| | || | || ||| || ||||| || Sbjct 702149 ACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAACAATTCC 702208 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 |||||| | ||||| ||||| ||||||||| ||| | | | ||||| | || Sbjct 702209 GTTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTTCCACGAATATTGTGCACAGA 702268 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | ||||||| ||||| || ||||| || Sbjct 702269 TACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATAT 702328 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 702329 GCCCTCAATACTATCATCTTTCAT 702352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562004430448560