Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq14854 531 2e-146 seq31 443 6e-120 seq15 352 9e-93 seq158 208 2e-49 seq770 102 2e-17 seq270 87.8 5e-13 >seq14854 Length=155296 Score = 531 bits (588), Expect = 2e-146 Identities = 710/987 (72%), Gaps = 0/987 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 576 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 635 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||| | || ||||||||||| | || | || | ||||| || Sbjct 636 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 695 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| || || | |||||| Sbjct 696 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 755 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || ||||||||||| | |||||| ||||| || || || Sbjct 756 AAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 815 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 816 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 875 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 876 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 935 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 936 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 995 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 |||||| || || || | ||| || || || ||||||||||| ||||| || ||||| || Sbjct 996 TACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1055 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| || Sbjct 1056 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1115 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| |||| ||||||| ||||| || || || ||||||||||| |||||||| || Sbjct 1116 TTGACCAATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 1175 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || | |||||| || | | ||||| ||||| | || |||| ||| Sbjct 1176 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 1235 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | | | |||| | ||||| | ||||| |||| ||| || || ||||| ||||| Sbjct 1236 ACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 1295 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 ||| || || | || ||| ||||||||||||||||| || || | ||| || || || Sbjct 1296 CCATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGA 1355 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || || || || ||||||||||| || |||| | ||||| ||||| Sbjct 1356 AGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGG 1415 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| || || || ||||| ||||||| || ||||| | |||| | | Sbjct 1416 TTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGA 1475 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 1476 AGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1535 Query 36929 GTTTGTACTTGTAACCCAGTCACATAA 36955 | || || || | ||||| ||| || Sbjct 1536 TTCAGTGCTAGTTATCCAGTTACAGAA 1562 >seq31 Length=2735125 Score = 443 bits (490), Expect = 6e-120 Identities = 714/1039 (69%), Gaps = 52/1039 (5%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 1059207 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 1059148 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||| | || ||||||||||| | || | || | ||||| || Sbjct 1059147 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 1059088 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| || || | |||||| Sbjct 1059087 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 1059028 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || ||||||||||| | |||||| ||||| || || || Sbjct 1059027 AAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 1058968 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 1058967 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 1058908 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 1058907 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 1058848 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 1058847 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1058788 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 |||||| || || || | ||| || || || ||||||||||| ||||| || ||||| || Sbjct 1058787 TACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1058728 Query 36449 GACAAACATAAAATTGAAAGTCCC------------------------------------ 36472 |||| ||| ||||||||||| || Sbjct 1058727 TACAATCATGAAATTGAAAGTACCAGAGTTTCCTAGAGCCATACCATCAGAAAAACGTCA 1058668 Query 36473 TGAAA-------TACCA---------AGAGGCATACCATCAGAGAAACTCCCTTGTCCAA 36516 ||||| ||||| ||||||||||||||||| ||||| ||||| |||| Sbjct 1058667 TGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAA 1058608 Query 36517 AAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATA 36576 ||||||| ||||| || || || ||||||||||| |||||||| || ||| | Sbjct 1058607 TTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAA 1058548 Query 36577 TCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGA 36636 |||| || | |||||| || | | ||||| ||||| | || |||| |||| | | Sbjct 1058547 TCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCTA 1058488 Query 36637 TACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGT 36696 |||| | ||||| | ||||| |||| ||| || || ||||| |||||||| || | Sbjct 1058487 CGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCAT 1058428 Query 36697 CGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGA 36756 | | || ||| ||||||||||||||||| || || | ||| || || || | || | Sbjct 1058427 CAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAA 1058368 Query 36757 CGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAA 36816 || || || || || ||||||||||| || |||| | ||||| ||||| ||||||| Sbjct 1058367 TAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAA 1058308 Query 36817 TACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTG 36876 ||||||| || || || ||||| ||||||| || ||||| | |||| | | ||| | Sbjct 1058307 TACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCG 1058248 Query 36877 TTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTAC 36936 | || | | ||||||||| | || |||||||| || | || || ||||| | || | Sbjct 1058247 TCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGC 1058188 Query 36937 TTGTAACCCAGTCACATAA 36955 | || | ||||| ||| || Sbjct 1058187 TAGTTATCCAGTTACAGAA 1058169 >seq15 Length=3327864 Score = 352 bits (390), Expect = 9e-93 Identities = 555/791 (70%), Gaps = 4/791 (1%) Strand=Plus/Minus Query 36169 GCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTA--GCATACTGGAA 36226 |||||||| | |||||||| ||||| || || || || ||| ||||| ||||| Sbjct 1964569 GCCAAGCAACTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAAAGCATATTGGAA 1964510 Query 36227 GATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG-TCTCTTCTTCTTGGC 36285 ||| | || ||||| || |||||||| || || || ||||| | ||||| ||||| | Sbjct 1964509 GATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAAATTTCTTCCTCTTGAC 1964450 Query 36286 CGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG 36345 ||||| | || || | || ||||||| | || ||||| | || | |||| Sbjct 1964449 CGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAG 1964390 Query 36346 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 36405 | || | || ||||||||| ||||| | || | ||||||||| || || || | Sbjct 1964389 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCTGAATACCCCAGCTACGCCTA 1964330 Query 36406 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 36465 ||| || || | ||||||||||| ||||| | | || || |||| || ||||||| Sbjct 1964329 ACATGTGAAATAGGTGCATAAGGATGTTGTGCTTAGTCTAGAATACAATTATGAAATTGA 1964270 Query 36466 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTC-CCTTGTCCAAAAGGGTAG 36524 |||| || || || || ||||||||||||||||| ||||| ||||| |||| |||||| Sbjct 1964269 AAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTACCTTGACCAATTGGGTAG 1964210 Query 36525 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 36584 | ||||| || || || ||||||||||| |||||||| || ||| ||||| || Sbjct 1964209 ATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 1964150 Query 36585 CTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATG 36644 | |||||| || | ||||| ||||| | || | || |||| | | |||| Sbjct 1964149 CGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACTCATGTAACAAGCTACGCCAAGT 1964090 Query 36645 AGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTT 36704 | ||||| | |||| |||| ||| || || ||||| ||||| || || || | || | Sbjct 1964089 AAGAAGTGTAGAACAACTAGTTCATAAGGACCACCGTTGTATAATCATTCATCAACGGAT 1964030 Query 36705 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCC 36764 | ||||||||||||||||| || || | ||| || || || | || | || || Sbjct 1964029 GTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 1963970 Query 36765 CCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCT 36824 || || || ||||||||||| || |||| | ||||| ||||| |||||||||||||| Sbjct 1963969 CCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCA 1963910 Query 36825 ATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGT 36884 || || || ||||| ||||||| || ||||| | |||| | | ||| || || | Sbjct 1963909 ATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAG 1963850 Query 36885 GCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACC 36944 | ||||||||| | || |||||||| || | || || ||||| | || || || | | Sbjct 1963849 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATC 1963790 Query 36945 CAGTCACATAA 36955 |||| ||| || Sbjct 1963789 CAGTTACAGAA 1963779 >seq158 Length=1381298 Score = 208 bits (230), Expect = 2e-49 Identities = 307/435 (71%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 963895 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 963954 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||| | || ||||||||||| | || | || | ||||| || Sbjct 963955 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 964014 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| || || | |||||| Sbjct 964015 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 964074 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || ||||||||||| | |||||| ||||| || || || Sbjct 964075 AAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 964134 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 964135 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 964194 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 964195 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 964254 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| ||||| | || ||||| Sbjct 964255 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 964314 Query 36389 TACCCCTGCAACACC 36403 |||||| || || || Sbjct 964315 TACCCCAGCTACGCC 964329 >seq770 Length=121610 Score = 102 bits (112), Expect = 2e-17 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 ||||| | || ||||||||||||||||| ||||| ||||| || | ||||||| ||| Sbjct 80689 CCTGACGTTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAG 80748 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATA 36590 || || ||| || | ||||||||| |||||||| || ||| ||||| || |||| Sbjct 80749 AAAACTGCAGTAGCAGTTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTGGCATA 80808 Query 36591 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 36629 || || | | ||||| ||||| | || |||| |||| Sbjct 80809 CCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAA 80847 >seq270 Length=897002 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || |||||||| || || ||||| ||||||||||||||||| || | || Sbjct 766482 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 766423 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGT 36058 |||||||| | || ||||||||||| Sbjct 766422 GCACGGTTGATGATATCAGCCCAAGT 766397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150427861160316