Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq14854 533 4e-147 seq31 444 2e-120 seq15 358 2e-94 seq158 210 7e-50 seq770 98.7 3e-16 seq270 87.8 5e-13 >seq14854 Length=155296 Score = 533 bits (590), Expect = 4e-147 Identities = 708/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 580 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 639 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | ||||| || || Sbjct 640 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 699 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | |||||||| | Sbjct 700 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 759 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 760 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 819 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 820 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 879 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 880 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 939 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || ||||||||| Sbjct 940 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACC 999 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 1000 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1059 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||| ||||||||||| || || || || ||||||||||||||||| ||||| ||||| Sbjct 1060 ATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGA 1119 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| ||||||| ||||| || || || ||||||||||| |||||||| || ||| Sbjct 1120 CCAATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1179 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | | ||||| ||||| | || |||| |||| Sbjct 1180 GCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAA 1239 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | ||| | | ||||| | ||||| |||| ||| || |||||||| || ||||| Sbjct 1240 GCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCAT 1299 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || ||| ||||||||||||||||| || || | ||| || || ||| | Sbjct 1300 TCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTA 1359 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || ||||||||||| || |||| | ||||| ||||| ||| Sbjct 1360 GGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCA 1419 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| || || || ||||| ||||||| || ||||| | |||| | | | Sbjct 1420 CGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTT 1479 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||||||||| | || |||||||| || | || || ||||| | Sbjct 1480 GCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1539 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||||| ||| || Sbjct 1540 GTGCTAGTTATCCAGTTACAGAA 1562 >seq31 Length=2735125 Score = 444 bits (492), Expect = 2e-120 Identities = 712/1035 (69%), Gaps = 52/1035 (5%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 1059203 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1059144 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | ||||| || || Sbjct 1059143 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 1059084 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | |||||||| | Sbjct 1059083 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 1059024 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 1059023 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 1058964 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 1058963 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 1058904 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 1058903 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 1058844 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || ||||||||| Sbjct 1058843 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACC 1058784 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 1058783 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1058724 Query 25933 AACATAAAATTGAAAGTCCC------------------------------------TGAA 25956 | ||| ||||||||||| || |||| Sbjct 1058723 ATCATGAAATTGAAAGTACCAGAGTTTCCTAGAGCCATACCATCAGAAAAACGTCATGAA 1058664 Query 25957 A-------TACCA---------AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGG 26000 | ||||| ||||||||||||||||| ||||| ||||| |||| || Sbjct 1058663 ATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGG 1058604 Query 26001 GTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCA 26060 ||||| ||||| || || || ||||||||||| |||||||| || ||| ||||| Sbjct 1058603 GTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 1058544 Query 26061 CGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCC 26120 || | ||| || || | | ||||| ||||| | || |||| |||| | | ||| Sbjct 1058543 AGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCTACGCC 1058484 Query 26121 GATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAG 26180 | | ||||| | ||||| |||| ||| || |||||||| || ||||| || || | Sbjct 1058483 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCAAC 1058424 Query 26181 GGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGAT 26240 || ||| ||||||||||||||||| || || | ||| || || ||| | || | || Sbjct 1058423 GGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAAT 1058364 Query 26241 TGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACC 26300 || || || || ||||||||||| || |||| | ||||| ||||| ||||||||||| Sbjct 1058363 GGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACC 1058304 Query 26301 ATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAA 26360 ||| || || || ||||| ||||||| || ||||| | |||| | | ||| || || Sbjct 1058303 ATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAA 1058244 Query 26361 AAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGT 26420 | | ||||||||| | || |||||||| || | || || ||||| | || || || Sbjct 1058243 TAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGT 1058184 Query 26421 AACCCAGTCACATAA 26435 | ||||| ||| || Sbjct 1058183 TATCCAGTTACAGAA 1058169 >seq15 Length=3327864 Score = 358 bits (396), Expect = 2e-94 Identities = 556/791 (70%), Gaps = 4/791 (1%) Strand=Plus/Minus Query 25649 GCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTA--GCATACTGGAA 25706 |||||||| | |||||||| ||||| ||| || || || ||| ||||| ||||| Sbjct 1964569 GCCAAGCAACTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAAAGCATATTGGAA 1964510 Query 25707 GATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACG-TCTCTTCTTCTTGGC 25765 ||| | || ||||| || |||||||| || || || ||||| | ||||| ||||| | Sbjct 1964509 GATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAAATTTCTTCCTCTTGAC 1964450 Query 25766 CGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAG 25825 ||||| | || || | || ||||||| | || ||||| | || | |||| Sbjct 1964449 CGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAG 1964390 Query 25826 TAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGA 25885 | || | || ||||||||| ||||| | || | ||||||||| || || || | Sbjct 1964389 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCTGAATACCCCAGCTACGCCTA 1964330 Query 25886 GCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGA 25945 ||| || || | ||||||||||| ||||| | | || || |||| || ||||||| Sbjct 1964329 ACATGTGAAATAGGTGCATAAGGATGTTGTGCTTAGTCTAGAATACAATTATGAAATTGA 1964270 Query 25946 AAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTC-CCTTGTCCAAAAGGGTAG 26004 |||| || || || || ||||||||||||||||| ||||| ||||| |||| |||||| Sbjct 1964269 AAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTACCTTGACCAATTGGGTAG 1964210 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | ||||| || || || ||||||||||| |||||||| || ||| ||||| || Sbjct 1964209 ATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGT 1964150 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATG 26124 | ||| || || | ||||| ||||| | || | || |||| | | ||| | Sbjct 1964149 CGCATACCCAGATGGAAGCTAAGCTCCCACTCACGACTCATGTAACAAGCTACGCCAAGT 1964090 Query 26125 AGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTT 26184 | ||||| | |||| |||| ||| || |||||||| || || || || || | || | Sbjct 1964089 AAGAAGTGTAGAACAACTAGTTCATAAGGACCACCGTTGTATAATCATTCATCAACGGAT 1964030 Query 26185 GCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCC 26244 | ||||||||||||||||| || || | ||| || || ||| | || | || || Sbjct 1964029 GTCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 1963970 Query 26245 CCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCT 26304 || || || ||||||||||| || |||| | ||||| ||||| |||||||||||||| Sbjct 1963969 CCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCA 1963910 Query 26305 ATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGT 26364 || || || ||||| ||||||| || ||||| | |||| | | ||| || || | Sbjct 1963909 ATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAG 1963850 Query 26365 GCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACC 26424 | ||||||||| | || |||||||| || | || || ||||| | || || || | | Sbjct 1963849 GTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATC 1963790 Query 26425 CAGTCACATAA 26435 |||| ||| || Sbjct 1963789 CAGTTACAGAA 1963779 >seq158 Length=1381298 Score = 210 bits (232), Expect = 7e-50 Identities = 305/431 (71%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 963899 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 963958 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | ||||| || || Sbjct 963959 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 964018 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | |||||||| | Sbjct 964019 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 964078 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 964079 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 964138 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 964139 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 964198 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 964199 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 964258 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || ||||||||| Sbjct 964259 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACC 964318 Query 25873 CCTGCAACACC 25883 || || || || Sbjct 964319 CCAGCTACGCC 964329 >seq770 Length=121610 Score = 98.7 bits (108), Expect = 3e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 25951 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 26010 ||||| | || ||||||||||||||||| ||||| ||||| || | ||||||| ||| Sbjct 80689 CCTGACGTTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAG 80748 Query 26011 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATG 26070 || || ||| || | ||||||||| |||||||| || ||| ||||| || ||| Sbjct 80749 AAAACTGCAGTAGCAGTTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTGGCATA 80808 Query 26071 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 || || | | ||||| ||||| | || |||| |||| Sbjct 80809 CCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAA 80847 >seq270 Length=897002 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 766482 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 766423 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||| | || ||||||||||| Sbjct 766422 GCACGGTTGATGATATCAGCCCAAGT 766397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151966789658904