Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4 152 6e-32 >seq4 Length=4469570 Score = 152 bits (168), Expect = 6e-32 Identities = 396/598 (66%), Gaps = 13/598 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| ||||| || || ||||| || |||||| Sbjct 3869077 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 3869018 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | |||||| | ||||||||| | || ||| ||| || Sbjct 3869017 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGAA 3868959 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 |||||| |||||||| ||||| || || | || |||| ||| |||| Sbjct 3868958 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAAC---- 3868903 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 || ||||| | ||| | ||||| || |||||| || || || || Sbjct 3868902 --CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGAT 3868845 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | | ||||| ||| ||| |||| || | || | || ||||| Sbjct 3868844 TGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACT 3868785 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || || || ||||| ||||| || || || || ||||| ||| | || || Sbjct 3868784 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTC 3868725 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 || | || ||||| || | ||||| ||| | ||| || ||| || || || Sbjct 3868724 AGCAACCTGGACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGA 3868665 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || |||||||| ||||| |||| | || |||||||||||| | || || |||| Sbjct 3868664 GGCGGCAAAGAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTC 3868605 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | | |||| |||| ||| ||||| || || ||||| ||| ||||| || Sbjct 3868604 CCAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGC 3868545 Query 37709 ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765 || ||||| |||||| | || || ||||| || | |||| |||| ||| Sbjct 3868544 TTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 3868488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592206821578160