Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq61 91.5 3e-13 >seq61 Length=2177692 Score = 91.5 bits (100), Expect = 3e-13 Identities = 243/357 (68%), Gaps = 17/357 (5%) Strand=Plus/Minus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | |||||| | || ||| | || || |||||| || Sbjct 1754161 AGCAGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATCCGAAGAG-TAATTCGGA 1754103 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 |||| || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 1754102 TTCTATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 1754045 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC-AGATTCTA 150482 |||| | ||||| || |||||||| | || | | |||||||| || || || Sbjct 1754044 AACAGCTGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGTGATGTCCCGAGTAACT- 1753986 Query 150483 TGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 || |||||| || | | ||| ||||||| ||| | |||||| | ||||| Sbjct 1753985 TGGCTGATGTTAGGCTTATAGCATTGGATATGGGAGCACTCGTTGCTGGAGCGAAGTACA 1753926 Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGAACGC-GATG 150599 | |||||||| ||||| | || || | | | || | ||| | ||| |||| || | Sbjct 1753925 GAGGTGAATTTGAAGAGAGGTTGAAGGC--TGTTCTGAAGGAAGTGGAAG-ACGCAGACG 1753869 Query 150600 ---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTG 150653 | || ||||| ||||||||||| || || || | ||||||||| ||||| Sbjct 1753868 GGAAAGTAATTCTCTTCATCGATGAGATACACTTGGTTTTAGGTGCTGGTAGGACTG 1753812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147371994181292