Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq102 116 4e-21 seq32 100 3e-16 seq4 93.3 5e-14 seq242 87.8 2e-12 >seq102 Length=1742045 Score = 116 bits (128), Expect = 4e-21 Identities = 282/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAG-ATCCC 175289 ||| | || || ||| | ||| |||| ||||||| | || | |||| | | | || || Sbjct 801647 GAGGTCGTAGAATTTTTGAAGAAACCTGAGAGATTTACTGCA-GTGGGGGCTCGTATTCC 801589 Query 175290 CCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCAT 175349 ||| | ||||| | ||| || ||||| || || ||| | || || || || Sbjct 801588 AAAAGGTGTTCTTCTTGTTGGTCCTCCTGGTACTGGGAAAACCTTGCTAGCAAAGGCAAT 801529 Query 175350 CGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| || ||| ||||| || || | || | | || | || || ||||||| Sbjct 801528 TGCTGGTGAAGCAGGTGTTCCATTTTTCTCAATT-TCAGGCTCAGAATTCGTTGAGATGT 801470 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| || ||| | || || ||||| || | | ||| |||||| | Sbjct 801469 TTGTTGGTGTTGGAGCCTCTCGAGTCCGTGATCTTTTCAAGAAGGCCAAGGAAAATGCTC 801410 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || ||||| || ||||||| |||||||| || || |||| | | |||| | | Sbjct 801409 CTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGGACTGGAATTG 801350 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || |||||| || || ||||| || | || |||||| | || || |||||||| Sbjct 801349 GAGG--AGGAAATGATGAAAGGGAACAGACCCTGAACCAACTATTGACTGAAATGGATGG 801292 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 || || | ||||| || | ||| ||||||| || ||||| | ||||| ||||| Sbjct 801291 TTTCGAAGGAAATACTGGTATAATAGTTGTTGCGGCAACCAATCGTGCAGATATTCTTGA 801232 >seq32 Length=2710826 Score = 100 bits (110), Expect = 3e-16 Identities = 193/285 (68%), Gaps = 20/285 (7%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| || |||||||| | || |||| | || ||||| | ||| ||||| Sbjct 1989797 CCAGGTACTGGGAAGACCCTTTTAGCTAGAGCAGTAGCTGGTGAGGCTGGTGTGCCATTT 1989856 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || | || || | ||||| ||| ||||||| |||||||| || || ||| Sbjct 1989857 TTCTCTTGTGCAGCATCAGAGTTTGTTGAGTTGTTTGTGGGTGTGGGAGCTTCTAGAGTT 1989916 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | || |||| || || |||||||| || |||||||| Sbjct 1989917 AGGGATTTGTTTGAGAAGGC----GAAATCTAAAGCGCCTTGTATTGTGTTTATTGATGA 1989972 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGC------TGGTGGTATGCCAGCAAATGACGA 175544 ||||||||| ||||| | || | | || ||||||| | |||||| || Sbjct 1989973 GATTGATGCTGTGGGAAGACAGAGAGGTGCAGGACTTGGTGGT------GGAAATGATGA 1990026 Query 175545 GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 |||||| || || |||||||| || | || || |||||||| || Sbjct 1990027 GAGAGAGCAGACTATTAATCAGCTTTTGACTGAAATGGATGGGTT 1990071 >seq4 Length=4469570 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 65011 CCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT-C 65069 || ||| |||| ||||||||||||||||| | | ||| || | || || | Sbjct 3868857 CCTTGTGTTGAAAAGAAGGCGAAATGGGCCCT----TCGTTGGATCGATGGTTCCGAAAC 3868912 Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||| |||||| | | || ||||| ||||| || || || |||||| ||| || Sbjct 3868913 CTTCGCGGAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTT 3868972 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| | || | ||||||||| || ||||| | ||||| || || |||||||||||| Sbjct 3868973 CTGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGA 3869032 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| |||| || ||| | ||| || ||||| Sbjct 3869033 GTTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGC 3869071 >seq242 Length=1004679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT-TCAACGGCT 75189 |||| ||| | || |||||||||| ||||||||||||| | | || || | || | | Sbjct 787455 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTCTTAAAGATT 787514 Query 75190 CGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCA 75249 | | || | | | |||| ||||| ||||| | ||| | || | | || ||||| Sbjct 787515 C-AGGGAAAGATTGTAGAAAGGCCACAACACATGCTGATGAGAGTATCTGTTGGAATCCA 787573 Query 75250 CGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 75309 | || || ||||| |||||| | ||||||| | |||||| ||| | ||||| Sbjct 787574 CAAAGAGGATATTGAATCTGTCATCAAGACATATCAGTTGATGTCTCAACGCTGGTTCAC 787633 Query 75310 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | ||||| || || |||||||| || ||||| || || Sbjct 787634 TCATGCATCTCCAACACTATTTAATGCTGGCACTCCAAGGCCTCA 787678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596458831939520