Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq14854 520 1e-142 seq31 426 2e-114 seq15 365 6e-96 seq158 233 2e-56 seq71 149 8e-31 >seq14854 Length=155296 Score = 520 bits (576), Expect = 1e-142 Identities = 704/976 (72%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 580 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 639 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | ||| | | ||||| || ||| Sbjct 640 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 699 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || || ||| Sbjct 700 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 759 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| | ||||||||| | | | |||||| ||| Sbjct 760 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 819 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| || Sbjct 820 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 878 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | ||| || || || || Sbjct 879 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 938 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 939 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 998 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 || ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 999 CCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 1058 Query 8370 GAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTG 8429 | |||||| || || |||||||| || ||||||||||| |||||||| || || || Sbjct 1059 AATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTG 1118 Query 8430 ACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTAC 8489 ||||| ||| || | ||||| |||||| |||||| | || ||||| |||||| || Sbjct 1119 ACCAATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 1178 Query 8490 ACAGATCCATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAG 8548 | ||||| |||| |||||| | ||| | | ||| |||||||| | |||||||||| Sbjct 1179 AGCAATCCAAGGTCGCATACCCAGACGG-AAGCTAAGCTCCCACTCACGACCCATGTAAC 1237 Query 8549 CAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACC 8608 || | |||| | |||||| | | || | | ||| ||||| ||||| || |||| Sbjct 1238 AAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACC 1297 Query 8609 ACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAG 8668 | ||||| | | || |||||||| || || || || ||||| || ||||| |||| Sbjct 1298 ATTCATCAACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAG 1357 Query 8669 ATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTT 8728 |||| | ||||| || || ||||||||||| || | | || |||| |||||||| Sbjct 1358 TAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTT 1417 Query 8729 CACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAG 8788 |||||||||| || || || || || ||||||||||| || || | ||||| || || Sbjct 1418 CACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAG 1477 Query 8789 CAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGT 8848 || | || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | Sbjct 1478 TTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 1537 Query 8849 TTGTACTTGTAACCCA 8864 || || || | ||| Sbjct 1538 CAGTGCTAGTTATCCA 1553 >seq31 Length=2735125 Score = 426 bits (472), Expect = 2e-114 Identities = 706/1028 (69%), Gaps = 56/1028 (5%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 1059203 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 1059144 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | ||| | | ||||| || ||| Sbjct 1059143 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 1059084 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || || ||| Sbjct 1059083 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 1059024 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| | ||||||||| | | | |||||| ||| Sbjct 1059023 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 1058964 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| || Sbjct 1058963 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 1058905 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | ||| || || || || Sbjct 1058904 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 1058845 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 1058844 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 1058785 Query 8310 ACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATAC 8369 || ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||||| Sbjct 1058784 CCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATAC 1058725 Query 8370 ------GAA----------------------------------------------CATGA 8377 ||| ||||| Sbjct 1058724 AATCATGAAATTGAAAGTACCAGAGTTTCCTAGAGCCATACCATCAGAAAAACGTCATGA 1058665 Query 8378 AGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATG 8437 | || || |||||||| || ||||||||||| |||||||| || || ||||||| || Sbjct 1058664 AATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTG 1058605 Query 8438 GATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCC 8497 | || | ||||| |||||| |||||| | || ||||| |||||| ||| |||| Sbjct 1058604 GGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCC 1058545 Query 8498 ATGGTCTCATACCTAAGCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATT 8556 | |||| |||||| | ||| | | ||| |||||||| | |||||||||| || | Sbjct 1058544 AAGGTCGCATACCCAGACGG-AAGCTAAGCTCCCACTCACGACCCATGTAACAAGCTACG 1058486 Query 8557 CCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCT 8616 |||| | |||||| | | || | | ||| ||||| ||||| || ||||| ||||| Sbjct 1058485 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCATCA 1058426 Query 8617 AATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACG 8676 | | || |||||||| || || || || ||||| || ||||| |||| |||| Sbjct 1058425 ACGGATGCCGCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATA 1058366 Query 8677 ACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATA 8736 | ||||| || || ||||||||||| || | | || |||| |||||||||||||||| Sbjct 1058365 ATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATA 1058306 Query 8737 CCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCT 8796 || || || || || || ||||||||||| || || | ||||| || || || | Sbjct 1058305 CCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTC 1058246 Query 8797 AACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTT 8856 || ||| ||| ||||| | ||| |||||||| || | ||||| | ||| | || || Sbjct 1058245 AATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTA 1058186 Query 8857 GTAACCCA 8864 || | ||| Sbjct 1058185 GTTATCCA 1058178 >seq15 Length=3327864 Score = 365 bits (404), Expect = 6e-96 Identities = 549/772 (71%), Gaps = 6/772 (1%) Strand=Plus/Minus Query 8098 AGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGAT-GCATACTGGAAGATTAATCTAC 8155 ||||||||||| | | | |||||| |||| | ||||| |||||||| |||| | Sbjct 1964558 AGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAAAGCATATTGGAAGATCAATCGGC 1964499 Query 8156 CAAAGTATCCATGAGCAGCAACAATATTATAGG-TCTCTTCTTCTTGACCAAACTTATAA 8214 |||| || |||||||| || || |||||||| | ||||| |||||||| || | ||| Sbjct 1964498 CAAAATAACCATGAGCGGCTACGATATTATAAAATTTCTTCCTCTTGACCGAATCTGTAA 1964439 Query 8215 CCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAA 8274 || | || ||| || | ||| || || || ||||| | | ||| || || || ||| Sbjct 1964438 CCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAA 1964379 Query 8275 CCGTGCATAGCACTGAAGAGTGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAA 8334 || |||||||||||||| || || || | ||| | || ||||| ||| ||| || || Sbjct 1964378 CCATGCATAGCACTGAATAGGGAGCCGCTGAATACCCCAGCTACGCCTAACATGTGAAAT 1964319 Query 8335 GGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAA 8394 | |||||||| ||||| |||| | | |||||| | ||||| || || |||||||| Sbjct 1964318 AGGTGCATAAGGATGTTGTGCTTAGTCTAGAATACAATTATGAAATTGAAAGTACCAGAG 1964259 Query 8395 ATACCTAGAGGCATTCCATCAGAGAATGA-ACCCTGACCAAATGGATATACTAAGAACAC 8453 || ||||||||||| |||||||| || ||| ||||||| ||| || | ||||| || Sbjct 1964258 ATTCCTAGAGGCATACCATCAGAAAAACTTACCTTGACCAATTGGGTAGATCAAGAAAAC 1964199 Query 8454 TGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAA 8513 |||| |||||| | || ||||| |||||| ||| ||||| |||| |||||| | Sbjct 1964198 TGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGCATACCCAG 1964139 Query 8514 GCGGTATGATAA-CTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGA 8572 || | | ||| |||||||| | || ||||||| || | |||| | |||||| | Sbjct 1964138 ATGGAA-GCTAAGCTCCCACTCACGACTCATGTAACAAGCTACGCCAAGTAAGAAGTGTA 1964080 Query 8573 AGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCC 8632 | ||| | | ||| ||||| ||||| || || || ||||| | | | ||||||| Sbjct 1964079 GAACAACTAGTTCATAAGGACCACCGTTGTATAATCATTCATCAACGGATGTCGCTTCCC 1964020 Query 8633 AAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGA 8692 | || || || || ||||| || ||||| |||| |||| | ||||| || || | Sbjct 1964019 AGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAA 1963960 Query 8693 TGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAG 8752 |||||||||| || | | || |||| |||||||||||||||||| || || || || | Sbjct 1963959 TGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAATGTCTACTG 1963900 Query 8753 GTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCA 8812 | ||||||||||| || || | ||||| || || || | || ||| ||| |||| Sbjct 1963899 GAGGAGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCCGTCAATAAGGTAGGGATCA 1963840 Query 8813 TTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 | | ||| |||||||| || | ||||| | ||| | || || || | ||| Sbjct 1963839 TCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCCA 1963788 >seq158 Length=1381298 Score = 233 bits (258), Expect = 2e-56 Identities = 313/433 (72%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 963899 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 963958 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| || ||| | ||| | | ||||| || ||| Sbjct 963959 GCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTACAGAT 964018 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || || ||| Sbjct 964019 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 964078 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 || | || ||| || || | | ||| | ||||||||| | | | |||||| ||| Sbjct 964079 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTTGAAA 964138 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | ||||| |||||||| |||| ||||| || |||||||| || || |||||||| || Sbjct 964139 CTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 964197 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| |||||||| || | ||||| | || ||| || | ||| || || || || Sbjct 964198 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 964257 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACAT 8309 ||| | | ||| || || || ||||| |||||||||||||| || || || ||||| | Sbjct 964258 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATAC 964317 Query 8310 ACCTGCTACCCCT 8322 || ||||| ||| Sbjct 964318 CCCAGCTACGCCT 964330 >seq71 Length=2054262 Score = 149 bits (164), Expect = 8e-31 Identities = 197/271 (73%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 8121 GTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAA 8179 |||||| |||| | ||||| |||||||| |||| ||||| || ||||||| || || | Sbjct 786232 GTTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAAGCATGAGCGGCTACGA 786290 Query 8180 TATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAG 8239 |||| || || ||||| |||||||| || | ||||| | || ||| || | ||| | Sbjct 786291 TATTCTAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 786350 Query 8240 TTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATC 8299 | | || ||||| | | ||| || || || ||| | |||||||||||||| || || | Sbjct 786351 TGCTTTCCCTGATCAAACTAGAAGTTACCAAGGAAGCATGCATAGCACTGAATAGGGAGC 786410 Query 8300 CACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTG 8359 | || | ||| |||| ||| || || || || |||||||| ||||| ||||| | Sbjct 786411 CGCCTTTTACACCAGCTAGGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAG 786470 Query 8360 CTTGGAATACGAACATGAAGTTAAACGTACC 8390 | |||||||| | ||| || || || ||||| Sbjct 786471 CCTGGAATACAATCATTAAATTGAAAGTACC 786501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615748049748880