Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq14854 511 1e-140 seq31 414 3e-111 seq15 342 1e-89 seq158 203 9e-48 seq71 104 7e-18 >seq14854 Length=155296 Score = 511 bits (566), Expect = 1e-140 Identities = 710/989 (72%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 576 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 635 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | |||||||||||| ||| || ||| | | ||| ||||| Sbjct 636 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 695 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | ||| Sbjct 696 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 755 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || ||| || || | || || ||||| | | |||||||||| || ||| ||||| Sbjct 756 AAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 815 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| ||||| || || |||||||| ||||| Sbjct 816 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 875 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||||| || Sbjct 876 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 935 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| || | | || ||||||||| || | | || || || Sbjct 936 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 995 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || ||||| | ||| || ||||||||||| || |||||||| || || ||||| Sbjct 996 TACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1055 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACC 41068 |||| |||||| ||||| || ||| |||||||| ||||||||||||||| ||| || Sbjct 1056 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1115 Query 41069 CTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGC 41128 ||||| | ||| || | ||||| || || ||| |||| | ||||||| ||||| Sbjct 1116 TTGACCAATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGC 1175 Query 41129 CACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTA 41188 ||| ||||| |||| |||||| || | | | ||| ||||||| | ||| ||| Sbjct 1176 AACAGCAATCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTA 1235 Query 41189 TGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 ||||| || | ||| ||||| | ||||| |||| ||| || || |||||||||| Sbjct 1236 ACAAGCTACGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAA 1295 Query 41249 CCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAG 41307 ||| || || | | |||| ||||||||||||||||| ||||||| || || || || Sbjct 1296 CCATTCATCAACGGATGCC-GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAG 1354 Query 41308 AGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGG 41367 | | |||| | || || || ||||| ||||| ||||| | || || || ||||| | Sbjct 1355 AAGTAGGAATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAG 1414 Query 41368 GCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACAT 41426 | ||||| || ||||| || ||||| || || || || || ||||| || || || ||| Sbjct 1415 GTTCACGAATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA- 1473 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | || || || | ||| | || ||||| | ||||||||||| || | ||| || ||| Sbjct 1474 GAAGTTGCCGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1533 Query 41487 TTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || |||||||| | ||||||||| || Sbjct 1534 TTTTCAGTGCTAGTTATCCAGTTACAGAA 1562 >seq31 Length=2735125 Score = 414 bits (458), Expect = 3e-111 Identities = 711/1041 (68%), Gaps = 56/1041 (5%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 1059207 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 1059148 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | |||||||||||| ||| || ||| | | ||| ||||| Sbjct 1059147 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 1059088 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | ||| Sbjct 1059087 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 1059028 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || ||| || || | || || ||||| | | |||||||||| || ||| ||||| Sbjct 1059027 AAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 1058968 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| ||||| || || |||||||| ||||| Sbjct 1058967 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 1058908 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||||| || Sbjct 1058907 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 1058848 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAA 40948 || || | ||||| || | | || ||||||||| || | | || || || Sbjct 1058847 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1058788 Query 40949 GACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAA 41008 || || || ||||| | ||| || ||||||||||| || |||||||| || || ||||| Sbjct 1058787 TACCCCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1058728 Query 41009 GACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA----- 41063 |||| |||||| ||||| || ||| | |||||| || |||||||||||| ||| Sbjct 1058727 TACAATCATGAAATTGAAAGTACCAGAGTTTCCTAGAGCCATACCATCAGAAAAACGTCA 1058668 Query 41064 -GAA----------------------------------------------CCCTGACCGA 41076 ||| || ||||| | Sbjct 1058667 TGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAA 1058608 Query 41077 ATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATA 41136 ||| || | ||||| || || ||| |||| | ||||||| ||||| ||| | Sbjct 1058607 TTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAA 1058548 Query 41137 TCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTA 41196 |||| |||| |||||| || | | | ||| ||||||| | ||| ||| |||| Sbjct 1058547 TCCAAGGTCGCATACCCAGACGGAAGCTAAGCTCCCACTCACGACCCATGTAACAAGCTA 1058488 Query 41197 CTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGT 41256 | || | ||| ||||| | ||||| |||| ||| || || |||||||||| ||| || | Sbjct 1058487 CGCCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCATTCAT 1058428 Query 41257 CCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGA 41315 | | | |||| ||||||||||||||||| ||||||| || || || ||| | ||| Sbjct 1058427 CAACGGATGCC-GCTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGA 1058369 Query 41316 ACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGT 41375 | | || || || ||||| ||||| ||||| | || || || ||||| || ||||| Sbjct 1058368 ATAATGGCACCGGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGA 1058309 Query 41376 ATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGC 41434 || ||||| || ||||| || || || || || ||||| || || || ||| | || || Sbjct 1058308 ATACCATCAATGTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGC 1058250 Query 41435 AGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGT 41494 || | ||| | || ||||| | ||||||||||| || | ||| || ||||| || || Sbjct 1058249 CGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGT 1058190 Query 41495 GCTAGTGACCCAGTTACAAAA 41515 |||||| | ||||||||| || Sbjct 1058189 GCTAGTTATCCAGTTACAGAA 1058169 >seq15 Length=3327864 Score = 342 bits (378), Expect = 1e-89 Identities = 555/790 (70%), Gaps = 8/790 (1%) Strand=Plus/Minus Query 40732 AAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA--TGAAGCATATTGAAATAT 40789 ||||| | || |||||||||| || ||| |||||||| | |||||||||| || || Sbjct 1964566 AAGCAACTAGGAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAAAGCATATTGGAAGAT 1964507 Query 40790 TAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAG-TCTCGCCTTCCTGACCAA 40848 | || ||||| ||||| || || |||||||| |||||| | || | || ||||| | Sbjct 1964506 CAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAAATTTCTTCCTCTTGACCGA 1964447 Query 40849 ACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAA 40908 | | || || | || |||||| |||| ||||| |||| || | ||||| | Sbjct 1964446 ATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTA 1964387 Query 40909 CAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCA 40968 | | | || ||||||||| || | | || | || || || || ||||| | || Sbjct 1964386 CCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCTGAATACCCCAGCTACGCCTAACA 1964327 Query 40969 TATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATG 41028 | || ||| ||||||| || |||||||| | | | ||| |||| ||||| ||||| | Sbjct 1964326 TGTGAAATAGGTGCATAAGGATGTTGTGCTTAGTCTAGAATACAATTATGAAATTGAAAG 1964267 Query 41029 TTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA-ACCCTGACCGAATGGATAAACT 41087 | ||| |||||||| ||||||||||||||| ||| ||| ||||| | ||| || | Sbjct 1964266 TACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTACCTTGACCAATTGGGTAGATC 1964207 Query 41088 AAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTC 41147 ||||| || || ||| |||| | ||||||| ||||| ||| ||||| |||| | Sbjct 1964206 AAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGTCGC 1964147 Query 41148 ATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAA 41207 ||||| || | | ||| ||||||| | || ||| ||||| || | ||| Sbjct 1964146 ATACCCAGATGGAAGCTAAGCTCCCACTCACGACTCATGTAACAAGCTACGCCAAGTAAG 1964087 Query 41208 AAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCC 41266 ||||| | |||| |||| ||| || || |||||||||| || || || | | || | Sbjct 1964086 AAGTGTAGAACAACTAGTTCATAAGGACCACCGTTGTATAATCATTCATCAACGGATGTC 1964027 Query 41267 GGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCC 41326 | |||||||||||||||| ||||||| || || || ||| | |||| | || || Sbjct 1964026 G-CTTCCCAGATTGGGTAAAAATGTAAACCTATAGCTGCAGAAGTAGGAATAATGGCACC 1963968 Query 41327 AGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTAT 41386 || ||||| ||||| ||||| | || || || ||||| || ||||| || ||||| || Sbjct 1963967 GGAAATAATGTTGTTTCCGTAAAGTAGAGACCCTGAAACAGGTTCACGAATACCATCAAT 1963908 Query 41387 ATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATG 41445 ||||| || || || || || ||||| || || || ||| | || || || | ||| | Sbjct 1963907 GTCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGCCGTCAATAAGG 1963849 Query 41446 CTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCC 41505 || ||||| | ||||||||||| || | ||| || ||||| || |||||||| | || Sbjct 1963848 TAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTATCC 1963789 Query 41506 AGTTACAAAA 41515 ||||||| || Sbjct 1963788 AGTTACAGAA 1963779 >seq158 Length=1381298 Score = 203 bits (224), Expect = 9e-48 Identities = 285/400 (71%), Gaps = 0/400 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 963895 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 963954 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||| | | |||||||||||| ||| || ||| | | ||| ||||| Sbjct 963955 GTTAGCACGGTTGATGATATCAGCCCAAGTGTTAATTACACGACCCTGACTGTCAACTAC 964014 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | ||| Sbjct 964015 AGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCGGT 964074 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 || ||| || || | || || ||||| | | |||||||||| || ||| ||||| Sbjct 964075 AAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTTGTT 964134 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| ||||| || || |||||||| ||||| Sbjct 964135 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 964194 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||||| || Sbjct 964195 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 964254 Query 40889 CCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCA 40928 || || | ||||| || | | || ||||||||| Sbjct 964255 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCA 964294 >seq71 Length=2054262 Score = 104 bits (114), Expect = 7e-18 Identities = 209/307 (68%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 40727 CGGGAAAGCACCAAGA-AAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAA 40785 ||||||| | |||| |||| ||||| || ||| |||||||| ||||||||| | Sbjct 786199 CGGGAAA---CAAAGAGAAGATGTGTA-CGAACGAGAGTTGTTGAAACTAGCATATTGGA 786254 Query 40786 ATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGAC 40845 | || | || ||||| ||| | || || |||||||| || ||||| || | || |||| Sbjct 786255 AGATCAATCGGCCAAAATAAGCATGAGCGGCTACGATATTCTAAGTTTCTTCCTCTTGAC 786314 Query 40846 CAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAG 40905 | || | || || | || |||||| |||| ||| | |||| || | |||| Sbjct 786315 CGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGCTTTCCCTGATCAAACTAGAAG 786374 Query 40906 TAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGA 40965 | || | | | ||||||||| || | | || || || || || | ||| | Sbjct 786375 TTACCAAGGAAGCATGCATAGCACTGAATAGGGAGCCGCCTTTTACACCAGCTAGGCCTA 786434 Query 40966 GCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGA 41025 || || ||||||||||| || |||||||| || || ||||| |||| ||| || |||| Sbjct 786435 AGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATTAAATTGA 786494 Query 41026 ATGTTCC 41032 | || || Sbjct 786495 AAGTACC 786501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143677052154036