Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq8 127 4e-24 seq128 120 5e-22 seq104 102 1e-16 seq447 96.9 6e-15 seq18 89.7 9e-13 seq146 84.2 4e-11 >seq8 Length=4063183 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | ||| ||||| || || || | || | ||| || || |||||||| Sbjct 1948290 ATACCACCACGCAAACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCT 1948231 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||||| || |||||||| ||||| ||||| || | || || ||||||||| Sbjct 1948230 GCAAGAGTTCTACCGTCCTCTAATTGCTTTCCAGCAAAGATCAGCCTTTGCTGATCAGGA 1948171 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || ||||| || || | || | ||| || || || ||| |||| Sbjct 1948170 GGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAACATTATCGATTGTGTCAGAACTCTCA 1948111 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || || || ||||| |||||||| Sbjct 1948110 ACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTTAACAAAGATTTGCAT 1948061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| || || |||| ||| | ||| | |||||| ||||| || || Sbjct 1949431 ATTCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCA 1949372 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || ||| ||| || | || || || ||||||||||| | ||| || || || Sbjct 1949371 GCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGT 1949312 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | || | ||| ||| || || ||| || Sbjct 1949311 GGAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTTTCT 1949252 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || | || || ||||| || ||||| Sbjct 1949251 ACCTCCAGGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1949202 >seq128 Length=1543362 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||| | ||||| || || |||| || | ||||| ||| || Sbjct 1025429 ATTTGCATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTG 1025488 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || || ||| || | ||| ||||| ||||| || |||||||| || Sbjct 1025489 TAATCCGCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGG 1025548 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || ||||| || || | ||| | ||| |||||||| ||| Sbjct 1025549 TCTGGAGGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAA 1025608 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||| || | ||| || || || ||||| | || || |||||||||||||| Sbjct 1025609 CTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1025664 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || || || ||||| | |||| |||||| ||||| Sbjct 1026113 ATTTGCATTCCACCACGTAGACGGAGGACAAGATGGAGGGTAGACTCTTTTTGGATATTG 1026172 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | | |||| ||| || | ||||| || ||||| || | ||||||||| Sbjct 1026173 TAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGTTGA 1026232 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| || || | ||| | ||| ||| || || ||| Sbjct 1026233 TCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAA 1026292 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || ||||| || || || || || || || || ||||| || ||||| Sbjct 1026293 CTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAAGATCTGCAT 1026348 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || | ||||| || || || || || ||||| || ||||| ||| Sbjct 1025975 TGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATT 1026034 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | ||| ||| || || || ||| || || ||||||||||| || || Sbjct 1026035 TTAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCG 1026094 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||| ||||| ||||||||| Sbjct 1026095 GTCAGAGTTTTAACAAAGATTTGCATT 1026121 >seq104 Length=1719749 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || || ||||| | || | ||| || || || ||||||| Sbjct 292614 ACCACCACGGAGACGGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC 292555 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | || |||||||| ||||| || | ||| || || || || Sbjct 292554 AAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGG 292495 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| ||| | ||| || || |||||||||||||| Sbjct 292494 AATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAAGACTCAAC 292435 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| || || || || || ||||| ||||| || || || ||||| || Sbjct 292434 CTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 292384 >seq447 Length=458199 Score = 96.9 bits (106), Expect = 6e-15 Identities = 113/151 (75%), Gaps = 4/151 (3%) Strand=Plus/Minus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 ||||||||||| ||||| | |||||| |||||||| | || |||| |||||| ||||| Sbjct 81911 AATTGTTTTCCAGCAAATACTAATCTTTGTTGATCCGAGGGAATTCTTTCTTTGTCTTGA 81852 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA--ACTTCTAGAGTTATAGTTT 193329 || || | ||| | ||| ||| || | ||| ||||| || || ||||| || || | Sbjct 81851 ATCTTTGCTTTAACATTGTCAATGGTGTTGGA--ACTCATGACATCGAGAGTAATGGTCT 81794 Query 193330 TACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || | || ||||| ||||| |||||||| Sbjct 81793 TTCCAATGAGGGTTTTAACAAAGATTTGCAT 81763 >seq18 Length=3280163 Score = 89.7 bits (98), Expect = 9e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | || || || || ||||| ||||||||||| |||||||| Sbjct 1292892 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 1292833 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || ||| ||||||||| | |||||||| || || || | |||||| Sbjct 1292832 TTGGCCTTAGCATTGTTGATAGTATCGCTGAATTCAACTTCCAGTGTAAT-GGTTTACCG 1292774 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || | ||| |||||||| Sbjct 1292773 GTCAGAGTTTTCACGAGTATCTGCATTTT 1292745 >seq146 Length=1436832 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| || || ||||| || || || || || |||||||| || || ||| Sbjct 48068 TGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGAATACCTTCTTTGTCCTGAATT 48009 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || ||| || || || || || ||||| || || Sbjct 48008 TTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCACCTCAAGGGTAATAGTCTTGCCA 47949 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || ||||| |||||||| Sbjct 47948 GTCAAGGTCTTCACAAAGATTTGCAT 47923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899487356669280