Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq128 98.7 1e-15 seq112 98.7 1e-15 seq8 96.9 5e-15 seq146 95.1 2e-14 seq4 93.3 6e-14 seq18 91.5 2e-13 >seq128 Length=1543362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| |||||||| || || || ||||| || || || || ||| Sbjct 1025664 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1025605 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || ||||| || || || || |||||||| || Sbjct 1025604 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1025545 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || ||||| || || ||| || || || | ||||| || Sbjct 1025544 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1025485 Query 156003 AT 156004 || Sbjct 1025484 AT 1025483 >seq112 Length=1653863 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | || || |||| || || |||||||| ||||| || || Sbjct 814803 AAAATGCAGATCTTTGTAAAGACCCTGACGGGCAAGACTATTACCTTAGAGGTAGAGTCA 814862 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | ||| || || || ||| || ||||| || |||||||| || ||||| Sbjct 814863 TCGGACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGCATTCCACCAGAC 814922 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||||| ||||||||||||||||| ||| Sbjct 814923 CAGCAGCGATTGATTTTCGCCGGTAAGCAGCTCGAGGAT 814961 >seq8 Length=4063183 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||||||| |||||||| | || || ||| || Sbjct 1948746 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTCGAGGTTGAAAGCTCA 1948805 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| || || || || ||||| |||||||| || Sbjct 1948806 GACACTATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 1948865 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||| ||| || ||||| || || ||| Sbjct 1948866 CAAAGGTTGATTTTTGCTGGAAAGCAACTTGAGGAT 1948901 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||||||||||| || || || || | || || ||| ||| Sbjct 1949202 ATGCAGATTTTTGTGAAGACATTGACTGGGAAGACAATCACCCTGGAGGTAGAAAGTTCA 1949261 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || ||||| |||||||| || || ||||| || Sbjct 1949262 GACACCATTGATAATGTGAAGGCAAAGATCCAAGACAAAGAAGGGATTCCACCAGACCAG 1949321 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| ||| || |||||||| || ||| || ||| | | ||||| ||| Sbjct 1949322 CAGCGTTTAATTTTTGCTGGCAAGCAGCTTGAGGATGGTAGGACTCTTGCTGATTACAAT 1949381 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || ||||| ||| Sbjct 1949382 ATCCAGAAAGAGTCCACACTCCATTTGGTG 1949411 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || ||| | |||||||| || ||||| || || || || || Sbjct 1949429 AATGCAGATCTTTGTCAAGACACTTACTGGAAAGACGATTACCTTGGAGGTGGAGAGCTC 1949488 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || ||||| || || || ||||| || || || || ||||| || Sbjct 1949489 AGATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCA 1949548 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||||| ||| ||||||||||| || ||| Sbjct 1949549 GCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAGGAT 1949585 >seq146 Length=1436832 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || || ||||| ||||| || || || | || || ||| || Sbjct 47694 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 47753 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | |||| ||||| ||| || || || || || |||||||| || ||||| || Sbjct 47754 CGACACTATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 47813 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | |||||| |||||||| || ||| | | || | | ||||| || Sbjct 47814 GCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACAA 47873 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || || ||| | || ||||| || || Sbjct 47874 CATCCAGAAGGAGTCAACCCTTCACTTGGT 47903 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||| || || || || || || |||| Sbjct 56583 ATGCAGATTTTTGTCAAGACCTTGACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCT 56642 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||||| || || || || || || || || || ||||| || Sbjct 56643 GATACTATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 56702 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||| || ||||||||||||||| || ||||| | || || | Sbjct 56703 CAGAGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGTAGGACTTTGGCTGACTACA-- 56760 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 56761 ACATCCAAA 56769 >seq4 Length=4469570 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||||||||||||| ||| |||||||| ||||| || ||||| || || || ||| Sbjct 3869077 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 3869018 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||||| || | |||||| | |||||||||||| ||| || | ||| Sbjct 3869017 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAG 3868958 Query 18275 AATATACCCTCAACGCACGCGAACGC 18300 || || || ||||| || || || || Sbjct 3868957 AAAATCCCTTCAACACAAGCAAAAGC 3868932 >seq18 Length=3280163 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/220 (70%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| ||| | | ||||| |||| || ||| | |||||| | ||||| ||| | Sbjct 1292745 AAAATGCAGATACTCGTGAAAACTCTGACCGGTAAACC-ATTACACTGGAAGTTGAA--T 1292801 Query 155880 TCTG--ATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAG 155937 || | ||| ||| || | || || |||||||| |||||||| || ||||||| Sbjct 1292802 TCAGCGATACTATCAACAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCCTCCAG 1292861 Query 155938 AACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATT 155997 | || ||||| |||||| ||| ||||||||||| || ||| | | || || | || | Sbjct 1292862 ACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACT 1292921 Query 155998 ATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAG 156037 | || || ||| | | || || ||| ||||| |||| Sbjct 1292922 ACAACATCCAGAAAAAATCAACTCTACATCTAGTGCTAAG 1292961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731736109666400