Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq8 118 2e-21 seq18 105 1e-17 seq128 100 5e-16 seq10 96.9 6e-15 seq146 87.8 3e-12 seq112 86.0 1e-11 >seq8 Length=4063183 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || ||||| | ||| | || || ||| || |||||| Sbjct 1949203 ATACCACCCCTTAGGCGCAGCACCAAATGGAGAGTTGATTCCTTTTGAATGTTGTAATCT 1949144 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | | | || || | ||||| ||||||||||| || ||||| ||||||||| Sbjct 1949143 GCTAGAGTCCTTCCATCCTCAAGCTGTTTCCCAGCAAAAATCAACCTCTGCTGGTCAGGT 1949084 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| |||||| || ||||| || || || || || Sbjct 1949083 GGGATGCCTTCCTTATCTTGAATTTTAGCCTTGACATTGTCGATGGTGTCAGAACTCTCA 1949024 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || || || ||||| || | || |||||||| Sbjct 1949023 ACCTCAAGGGTGATGGTCTTCCCTGTCAATGTCTTCACAAAAATCTGCAT 1948974 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | || ||||| | || | |||||| ||||| ||||| Sbjct 1949431 ATTCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCA 1949372 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | || || | || || |||||||||||||| | ||| ||||| ||| Sbjct 1949371 GCAAGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGT 1949312 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || |||||| || || ||||| |||| Sbjct 1949311 GGAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTTTCT 1949252 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || ||||| ||||| || | || |||||||| Sbjct 1949251 ACCTCCAGGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 1949202 Score = 89.7 bits (98), Expect = 9e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||| | |||||| ||| ||||| || | | | || | || |||| || ||||| Sbjct 1949627 AGTTGACTCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTCCAGCTGCTTACC 1949568 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||||||| || ||||| ||||| ||||| || || || ||||| || || || || Sbjct 1949567 AGCAAAAATCAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGCCTT 1949508 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| || |||||||| || || || | ||||| || || ||||| | ||| Sbjct 1949507 CACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATCGTCTTTCCAGTAAGTGT 1949448 Query 172052 TTTAATGAATATCTGCATT 172070 || | || ||||||||| Sbjct 1949447 CTTGACAAAGATCTGCATT 1949429 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || | || | || | ||| || |||||| || || Sbjct 1948975 ATACCACCTCGCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATATTGTAGTCA 1948916 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | ||| || ||||||||||| || || || ||||| || Sbjct 1948915 GCAAGAGTACGACCATCCTCAAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGA 1948856 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || ||||| || ||||| ||||| ||||| ||| Sbjct 1948855 GGAATGCCCTCCTTGTCCTGAATTTTTGCCTTAACATTGTCAATAGTGTCTGAGCTTTCA 1948796 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || ||||| || ||||| | || |||||||| Sbjct 1948795 ACCTCGAGGGTAATAGTCTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1948746 >seq18 Length=3280163 Score = 105 bits (116), Expect = 1e-17 Identities = 116/151 (77%), Gaps = 5/151 (3%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || || ||||| || || ||||||||||| |||||||| Sbjct 1292892 TGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGAGGGATTCCTTCTTTGTCTTGTATC 1292833 Query 171984 TTATTTTTTACATTAGTTATAGTAT--CTGACGATTCTACTTCTAGAGTAATGGTTTTAC 172041 || || |||| | ||||||| |||| |||| ||||| || ||||||| ||||| Sbjct 1292832 TTGGCCTTAGCATTGTTGATAGTATCGCTGA--ATTCAACTTCCAGTGTAATGG-TTTAC 1292776 Query 172042 CAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || | ||||| | || |||||||||||| Sbjct 1292775 CGGTCAGAGTTTTCACGAGTATCTGCATTTT 1292745 >seq128 Length=1543362 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || | || | || | ||||| ||| || ||||| Sbjct 1025435 ATGCCACCTCTAAGGCGAAGAACAAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCC 1025494 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | | || || | ||| || |||||||| || |||||||| ||||| || Sbjct 1025495 GCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGA 1025554 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| ||||||||||| || Sbjct 1025555 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCA 1025614 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| || || || || ||||| |||| ||||| ||||| Sbjct 1025615 ACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCAT 1025664 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || || || ||||| | ||| | ||| || || ||||| ||| Sbjct 1024979 ATCCCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCT 1025038 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | |||| || | ||||||||||||||| || || | ||| ||||| || Sbjct 1025039 GCTAGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGG 1025098 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| || || || |||||||| || Sbjct 1025099 GGAATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTCTCA 1025158 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| || || ||||| || || || | || || ||||| Sbjct 1025159 ACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 >seq10 Length=3946082 Score = 96.9 bits (106), Expect = 6e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| | || || ||| | || || | || || || || || || |||| Sbjct 3853630 AATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCG 3853571 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| || ||||| || ||||| || ||| ||| ||||| ||||| Sbjct 3853570 CTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGT 3853511 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || |||||| ||||| || || || || || || || | ||||| | ||| ||||| Sbjct 3853510 GTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTG 3853451 Query 172067 CATTTT 172072 |||||| Sbjct 3853450 CATTTT 3853445 >seq146 Length=1436832 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || || |||| || || | ||| | || | || || |||||| ||||| Sbjct 56584 ATACCTCCCCTGAGTCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCG 56525 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | | | | || ||||| || |||||||||||||| || || || ||||| || Sbjct 56524 GCTAATGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGA 56465 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || || || || ||||| || || || || || Sbjct 56464 GGGATGCCCTCTTTGTCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAGCTCTCA 56405 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || ||||| || || ||||| || ||||| | || | ||||||| Sbjct 56404 ACCTCAAGTGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGACCTGCATT 56354 >seq112 Length=1653863 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967 |||| | || || | || ||||| || ||||| |||| ||| ||||| ||||| || || Sbjct 814967 TCGTCCATCCTCGAGCTGCTTACCGGCGAAAATCAATCGCTGCTGGTCTGGTGGAATGCC 814908 Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027 ||| || ||||| || ||| || ||||| || || || || || ||||| |||| Sbjct 814907 TTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCCGATGACTCTACCTCTAA 814848 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || || || || | || || | || ||||||||||| Sbjct 814847 GGTAATAGTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATTTT 814803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904967938873200