Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq423 161 3e-34 seq20 145 2e-29 seq106 136 1e-26 seq89 136 1e-26 seq102 125 2e-23 seq32 107 6e-18 seq21 105 2e-17 seq2327 86.0 2e-11 >seq423 Length=502014 Score = 161 bits (178), Expect = 3e-34 Identities = 288/418 (69%), Gaps = 12/418 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| |||||||| || | || ||| || ||||| || || |||||||||||| | Sbjct 362460 TAAAACCATCCATTTCAGTAAGAAGTTGGTTCAGTGTCTGCTCTCTTTCATCATTT---C 362516 Query 288998 CTCTTGAATCACCCGAATC-GCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGA 289054 ||| |||| | | | |||| | | | ||||||||||||||||| ||||| | Sbjct 362517 CTC------CACCAATACCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAATAA 362570 Query 289055 AAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 |||| | || || ||||||||| |||| | ||||| || || || | || |||| Sbjct 362571 AAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTCCCTGACTCTAGAAGCTC 362630 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 | | ||||||| |||| || | || || || | || | || ||||| || || Sbjct 362631 CTACACCAACAAACATCTCAATGAACTCTGAGCCAGAGAGAGAAAAGAATGGCACCCCTG 362690 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 |||| | || | ||| | || || | |||||| ||||| || ||||| || |||| | Sbjct 362691 CTTCTCTGGCAATCGCCTTAGCTAGCAATGTCTTCCCTGTCCCTGGTGGCCCTACTAAGA 362750 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 ||| ||||||||||| ||||| ||| | | | | ||||| || |||| || || | Sbjct 362751 GAAATCCCTTTGGTATCTTTGCTCCAACTGCAGCAAACTTCTCTGGAGTCTTCAAGAACT 362810 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| || | || || | |||||| |||| | ||| || |||||| |||| || Sbjct 362811 CAACAATCTCTTGAAAATCTTGTTTTGCTTCATTAACTCCAGCCACATCATCAAATGT 362868 >seq20 Length=3188724 Score = 145 bits (160), Expect = 2e-29 Identities = 222/314 (71%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| || || ||||| ||| | ||| || | |||||| || || || ||| ||||| Sbjct 1718294 CATGATATCCTCCATGGCCTTCACTAACCGCCTCTGAATGTACCCGGTCTCAGAAGTTTT 1718235 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | ||||||||||||||||||||| | ||||| ||| Sbjct 1718234 CACAGCAGTATCAATCAGACCTTCTCTACCACCCATAGCATGGAAGAAGAACTCTTGCGG 1718175 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || |||| | | | || |||| || |||||||| || || || || Sbjct 1718174 GGTCAGTCCCCGGAGATATGAATTCTCCACAAAACCACGACTTTCCGGACCATAATCATC 1718115 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||||||| || || || || | || | | | | || |||| ||||| ||||| |||| Sbjct 1718114 TTTGGTAAAATGAGGAAGAGTACGGTCTATGA-ATCCAAATGGAATACGTTTTCCTTCAA 1718056 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 ||||||| || |||| || | | |||| || || || || | | ||| ||||| || | Sbjct 1718055 CGTTCTGTTGCCCCACACAAGCAGTCATTTGAGATATGTTGATAAAACTTCCCTTCGACC 1717996 Query 302864 CAGCATTTACCATA 302877 ||||| | |||||| Sbjct 1717995 CAGCAGTAACCATA 1717982 >seq106 Length=1697319 Score = 136 bits (150), Expect = 1e-26 Identities = 325/478 (68%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATA---GATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | |||||| | | ||| | Sbjct 1377146 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTACAACTACACCAGATGTG 1377087 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATTAAGTGTTTGTTCCCTTTCAT 288988 ||| || |||||||||||| || | || | |||||| | || ||| | ||||| Sbjct 1377086 GTT-GC--AAATCCATCCAT--TTCTACAAGCAGTTGATTTAAAGTACTTTCACGTTCAT 1377032 Query 288989 CATTTGAACCTCTTGAATCACCCGAATCGCTC-CtttttttACCAACAGCATCAATTTCG 289047 ||||| |||| | | | || ||| | ||| | ||||| ||||||||| || Sbjct 1377031 CATTT---CCTCCAGCAA-AGCCTCCCCGCCCTCTTGCTCGACCAATAGCATCAATCTCA 1376976 Query 289048 TCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGG 289107 ||||||||||| | || || | | |||||| || |||||| || || | Sbjct 1376975 TCAATGAAAATTATACTAGGTGCAGATTGTCTTGCCTCCTGAAATAAGCTCCTAACTCTA 1376916 Query 289108 GATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT-GT 289166 | || ||||| ||||||| |||| || | |||||| || | || | | || ||| | Sbjct 1376915 GCTGGTCCAACACCAACAAACATCTCCATAAATTCTGACCCAGAAA-TCGAGAGAAAAGG 1376857 Query 289167 TACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 |||| | ||| |||||| || | || ||||||||||| || || ||||| || || Sbjct 1376856 TACACCAGATTCTCCTGCTGTAGCTTTAGCTAGAAGTGTCTTTCCGGTCCCAGGAGGACC 1376797 Query 289227 CTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCT 289285 | ||| ||| | ||||| || | ||| || |||| | | || ||||||| ||| ||| Sbjct 1376796 CACTAGCAGAGCACCCTTAGGAATTTTGGCTCCCAACTG-CTCGTATTTCTTGGGGTTCT 1376738 Query 289286 TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | | ||| | || | |||| || ||| | || ||||| |||||||| || ||||| Sbjct 1376737 TAAGAAAGTGGACGAATTCCATAATTTCTTGCTTAGCCTCGTCACATCCAGCCACATC 1376680 >seq89 Length=1836497 Score = 136 bits (150), Expect = 1e-26 Identities = 185/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || || ||||| | ||| ||||| || ||||| ||||| | |||| ||| Sbjct 509809 GGCTATCAGCCCACAACGCTCACAAACATGAACTCTGTATGCATCGCTTTGGTCAAATAA 509750 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| || ||| |||||||| | |||||||||||| |||||||| || || Sbjct 509749 CCGCTCCTTGAGAAAATGAGCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCC 509690 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||||||||||||||||| || | || ||| || |||||||| | ||||| | || Sbjct 509689 AAAACGAAGACCACCATCACGTGACCGACCTTCCGCAGGCTGCCTTGTGAGGATTTGCAC 509630 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||| || || | ||| ||| |||| ||||||||||| || ||||||||| | Sbjct 509629 AGGGCCTCTGCCTCTAGAATGAATCTTGTCATCAACCATATGCTTCAGGCGCTGGTAGTA 509570 Query 251643 TGCGGGACCGATGAAGAT 251660 | |||||| | ||| || Sbjct 509569 CGTGGGACCAAGGAATAT 509552 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 233262 AAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGAC 233321 |||||| | |||||||||||||||||||||||| || ||||| || |||| ||| |||| Sbjct 509737 AAAATGA-GCAGCACCGTGAGCAATCATACAATCTCGCTCCATCTCTCCAAAACGAAGAC 509679 Query 233322 CACCATCATTTGACCTACC 233340 |||||||| ||||| ||| Sbjct 509678 CACCATCACGTGACCGACC 509660 >seq102 Length=1742045 Score = 125 bits (138), Expect = 2e-23 Identities = 284/417 (68%), Gaps = 14/417 (3%) Strand=Plus/Plus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || || | ||| || || || |||||||||||||||||| ||| Sbjct 801289 AAACCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCTCCT 801348 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | ||| | | || ||| ||| ||||||||||||||||| |||| || | Sbjct 801349 CC--AATTCC---AGTCCCTC-TTTGCCGCCCAACAGCATCAATTTCATCAACAAATACA 801402 Query 289060 ACACACGGAGAATTTTGTCTCGCAAT--TGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 | || |||| ||||| | || | || ||| | || | || || || ||||||| Sbjct 801403 ATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAAGA--TCACGGACTCGAGAGGCTCCAA 801460 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCT 289176 ||||||| |||| || || ||||| || | || | |||| | |||| ||| |||| Sbjct 801461 CACCAACAAACATCTCAACGAATTCTGAGCCTGAAA-TTGAGAAAAATGGAACACCTGCT 801519 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || || || | |||| | || || | || || || || ||||| || || | | ||| Sbjct 801520 TCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGA 801579 Query 289237 ACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCT 289296 || || ||||| | ||||| | | || || ||||||| |||| ||||||||| Sbjct 801580 ACACCTTTTGGAATACGAGCCCCCACTGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCT 801639 Query 289297 ACAATTTCCTCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGT 289352 || | ||| || || | |||||| ||||| ||| || || |||||| |||| || Sbjct 801640 ACGACCTCCATAAAATCTTGTTTTGCTTCATCTACA-CCAGCAACATCATCAAATGT 801695 >seq32 Length=2710826 Score = 107 bits (118), Expect = 6e-18 Identities = 278/417 (67%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 || |||||||| || |||| ||||||| || || || || ||||||||| ||| Sbjct 1990071 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCCACCA 1990012 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | || | | | | ||| | || || ||||||||||| || ||||| || | Sbjct 1990011 CCA-AGTC--CTGCACCTCTCTGTCTT---CCCACAGCATCAATCTCATCAATAAACACA 1989958 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | ||| || | || | |||| | |||| || || || || | || ||||| | | Sbjct 1989957 ATACAAGGCGCTTTAGATTTCGCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 1989898 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 || ||| ||| || ||||| || || || | || || | |||| ||| || || Sbjct 1989897 CCCACAAACAACTCAACAAACTCTGATGCTGC-ACAAGAGAAAAATGGCACACCAGCCTC 1989839 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || |||||||| || || | ||| ||||| || || || ||||| || | || ||| Sbjct 1989838 ACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGGTGGACCAACCAAAAGACA 1989779 Query 289239 TCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 || ||||||| || || || ||||| |||| || ||||| | || ||||| || Sbjct 1989778 CCCTTTTGGTATCTTAGCACCTAAAGCAG---TATACTTATCAGGATTTTTCAAAAAATC 1989722 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | ||||| | || |||| || | |||| || || |||||||||||||| Sbjct 1989721 AACCACTTCCTGTAACTCTAATTTAGCTTGATCAGCACCAGCAACATCAGCAAAAGT 1989665 >seq21 Length=3070274 Score = 105 bits (116), Expect = 2e-17 Identities = 322/481 (67%), Gaps = 25/481 (5%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT---AGATTCG 288930 || ||| |||||||||||| | ||| ||||| | || | || ||| | |||| | Sbjct 470640 AAGGCTTTGTCTAATATATCAGGTCTATTTGTGCCAGCAAGTATAACCACGCCAGATGTG 470581 Query 288931 GTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATT--AAGTGTTTGTTCCCTTTC 288986 || || ||| || ||||| || || | |||||| ||||| || || | ||| Sbjct 470580 GTG-GC--AAAACCGTCCAT--TTCAACAAGCAGTTGATTTAAAGTGCTT--TCACGTTC 470528 Query 288987 ATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt--ACCAACAGCATCAATT 289044 ||||| | |||| |||| | || ||| |||| || | ||||| |||||||| Sbjct 470527 ATCATGT---CCTCCTGAAA-AGCCACCTCG-TCCTCTTGCTCGACCAATGGCATCAATC 470473 Query 289045 TCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACA 289104 || ||||||||||| | || || | | || || || |||||| || || Sbjct 470472 TCATCAATGAAAATTATACTAGGTGCACACTGCCTTGCCTCCTGAAATAAGCTCCTAACT 470413 Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT 289164 | || || ||||| |||||| |||| || | ||| || || | || | | || ||| Sbjct 470412 CTGGCTGGTCCAACGCCAACAAACATCTCCATAAAATCTGATCCAGAAA-TAGAGAGAAA 470354 Query 289165 -GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 | |||| | || |||||| || | |||||||||||||| || || ||||| || Sbjct 470353 AGGTACACCAGACTCTCCTGCTGTAGCTTTGGCCAGAAGTGTCTTCCCAGTCCCAGGAGG 470294 Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGC 289282 ||| ||| ||| | ||||| || | ||| || |||| ||| || |||||||| ||| Sbjct 470293 ACCCACTAGAAGAGCACCCTTCGGAATTTTGGCTCCCAACAG-CTCATATTTCTTTGGGT 470235 Query 289283 TCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342 | || | || | || | ||| | ||| | ||||||||||||||||| || |||| Sbjct 470234 TTTTAAGGAAGTGGACGAACTCCATGATTTCTTGCTTTGCCTCATCACATCCAGCCACAT 470175 Query 289343 C 289343 | Sbjct 470174 C 470174 >seq2327 Length=1645 Score = 86.0 bits (94), Expect = 2e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || |||||||||| ||| ||||||||||| | | |||| ||| | ||| || | Sbjct 324 CCGACAGCATCAAGTTCATCAATGAAAATGATTGAAGGAGCATTCTTTCTTGCTACACTG 265 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | ||||| | ||| | ||||| |||||| ||||||| ||||||||| ||| Sbjct 264 AAAAGGTCTCTAATACGAGCAGCTCCTCTTCCAACAAACATTTCAACAAATTCACTAGCA 205 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || || || | ||| ||||| ||||| || || | || || | || || Sbjct 204 GAAACAGAAAAAAAGGGTACTCCAGCTTCTCCTGCCACAGCACGAGCTAGTAAGGTTTTT 145 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 ||||| || ||||| || | | || || || |||||| |||||||| Sbjct 144 CCTGTCCCTGGTGGACCTACAAGCAGTACACCTCTTGGTAACTTTGCCCC 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471537488273798