Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq300 100 3e-15 seq4 96.9 4e-14 seq10 86.0 8e-11 >seq300 Length=797107 Score = 100 bits (110), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| |||||| ||||| || || ||||||| || Sbjct 786916 GCGGCTAACTACCTGAACATCAAGAGTCTGCTTGATCTGACCTGTCAGACTGTGGCAGAC 786975 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | || |||||||| ||||||||||| ||||||||| ||| Sbjct 786976 ATGATCAAAGGAAAGACCCCAGAGGAGATTCGCAAGACCTTCAACATCAAGAACG 787030 >seq4 Length=4469570 Score = 96.9 bits (106), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || ||||| ||||| |||||||| ||||| || || || || | | |||| || || ||| Sbjct 3868774 GAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGG 3868715 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||||| || || |||||||| ||||||||||| |||||| || Sbjct 3868714 ACATCTTTCATGAACCTTCCAGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAG 3868655 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTG 869778 || || || || || |||| || || Sbjct 3868654 AAGGCAAGCACATGAGTGATGAAATG 3868629 >seq10 Length=3946082 Score = 86.0 bits (94), Expect = 8e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1592172 TTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCA 1592231 |||| |||| | || || | |||||| |||| ||| |||||| |||||| || Sbjct 52679 TTGATATGATTTTGGCTGCTAGCTACCTGAACATTAAGAGTCTGCTTGATCTTACTTGTC 52620 Query 1592232 AGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACA 1592291 || ||||||| | |||||||| || ||| | || |||||||| ||||||||||||||| Sbjct 52619 AGACTGTGGCAGATATGATCAAAGGGAAGACTCCATAGGAGATCTGCAAGACCTTTAACA 52560 Query 1592292 TCAAG 1592296 | ||| Sbjct 52559 TTAAG 52555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105920211198718