Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq18 91.5 1e-13 seq146 89.7 4e-13 seq128 89.7 4e-13 seq312 82.4 6e-11 >seq18 Length=3280163 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| ||| | || |||||| | ||||| ||| ||||||| | ||| || Sbjct 1292745 AAAATGCAGATACTCGTGAAAACTCTGACCGGTAAA-CCATTACACTGGAAGTTGAATTC 1292803 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||||| || | | | || ||||| ||||||||||| | || || Sbjct 1292804 AGCGATACTATCAACAATGCTAAGGCCAAGATACAAGACAAAGAAGGAATCCCTCCAGAC 1292863 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| || |||| ||| ||||| ||||| ||||||| | | || ||||||| ||| Sbjct 1292864 CAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTAC 1292923 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGG 110496 ||||| || ||| |||| || | || | ||| |||| || || || Sbjct 1292924 AACATCCAGAAAAAATCAACTCTACATCTAGTGCTAAGGCTTCGTGG 1292970 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| | ||||||||||| || || ||||| || ||||| | || ||| Sbjct 56354 AATGCAGGTCTTTGTCAAAACCTTGACTGGCAAGACTATTACACTTGAGGTTGAGAGCTC 56413 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | | || || |||||| |||||||| ||| | || || || Sbjct 56414 CGACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCA 56473 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| ||||| ||| |||| |||| || ||| | || |||||||| Sbjct 56474 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAA 56533 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACT 110490 ||||| || ||||| || | || | ||||| ||||| Sbjct 56534 TATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGACT 56572 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || || ||||| ||||| || ||||| ||| | || || Sbjct 47694 AATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACCCTTGAGGTTGAAAGCTC 47753 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| ||| | | | | || ||| ||||| ||||| |||||| | ||| || || Sbjct 47754 CGACACTATTGACAACGTTAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 47813 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | ||| || || ||||| ||||||| | | || | || |||||||| Sbjct 47814 GCAAAGATTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGGACCCTTGCTGATTACAA 47873 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| || || || || || | ||| |||| Sbjct 47874 CATCCAGAAGGAGTCAACCCTTCACTTGGT 47903 >seq128 Length=1543362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| |||||||| ||||| || || || || ||||| | || ||| | Sbjct 1025436 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1025377 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| |||||| ||||| || || | ||| || || Sbjct 1025376 GATACCATTGACAACGTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 1025317 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||| ||||||||| Sbjct 1025316 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCAGATTACAAC 1025257 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 1025256 ATTCAGAAAGAATCAACCCTGCAC 1025233 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || || || || || || ||||| | || ||| | Sbjct 1025664 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1025605 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | || ||| ||||| ||||| || || | || || || Sbjct 1025604 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1025545 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | ||| || || || || ||||||| || || |||||||||||||| Sbjct 1025544 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1025485 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| |||||||| || ||||| Sbjct 1025484 ATTCAGAAAGAATCAACCCTGCAC 1025461 >seq312 Length=758973 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | ||||| || ||||| ||| | || ||| | Sbjct 43226 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTAGAGGTGGAAAGTTCT 43167 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || |||||| || || ||||| | ||| |||||| Sbjct 43166 GATACAATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCCCCGGATCAG 43107 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | || || || ||| ||||||| | | || | || ||||||||| Sbjct 43106 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 43047 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| | || ||||| Sbjct 43046 ATCCAGAAGGAGTCTACCCTCCATTTGGTG 43017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412766861995022