Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq128 95.1 1e-14 seq146 93.3 3e-14 seq312 86.0 5e-12 seq8 84.2 2e-11 >seq128 Length=1543362 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| ||||| || || || || ||||| | || ||| | Sbjct 1025208 ATGCAAATTTTTGTCAAGACTTTGACTGGGAAGACAATTACATTGGAGGTTGAGAGTTCA 1025149 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || ||| ||||||| || || || || | ||| || ||| Sbjct 1025148 GATACCATTGACAACGTCAAAGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAG 1025089 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| |||||||| || ||||||| | || | || ||||| ||| Sbjct 1025088 CAGCGTTTGATCTTTGCTGGTAAACAACTTGAGGACGGGAGGACTCTAGCAGACTATAAC 1025029 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || |||||||| || | || |||||||| | ||| |||| || Sbjct 1025028 ATCCAGAAGGAGTCAACTCTCCATTTGGTGTTGCGTTTGAGAGGAGG 1024982 >seq146 Length=1436832 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || || || |||||||| || | || |||| | Sbjct 56583 ATGCAGATTTTTGTCAAGACCTTGACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCT 56642 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || |||||| || || || || | || || ||| Sbjct 56643 GATACTATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCACCAGACCAG 56702 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| || || | | || |||| ||||||||| Sbjct 56703 CAGAGGCTGATCTTTGCAGGGAAGCAGCTCGAAGATGGTAGGACTTTGGCTGACTACAAC 56762 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| |||||| Sbjct 56763 ATCCAAAAGGAGTCTACTTTGCAC 56786 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || || || |||||||| || | || |||| | Sbjct 48379 ATGCAGATTTTTGTGAAGACCTTGACTGGGAAAACCATCACTTTGGAGGTGGAGAGTTCT 48438 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || || || | || ||| ||| Sbjct 48439 GATACCATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGAATCCCACCGGACCAG 48498 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||| || || | | || |||||||||||||| Sbjct 48499 CAGAGGCTGATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACTCTGGCGGACTACAAC 48558 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 48559 ATCCAAAAGGAGTCTACTCTGCAC 48582 >seq312 Length=758973 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| |||||| | || || || ||||| ||| | || ||| | Sbjct 43226 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTAGAGGTGGAAAGTTCT 43167 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| ||||| ||||| | ||| ||||||| Sbjct 43166 GATACAATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCCCCGGATCAG 43107 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | || || || ||| ||||||||| || | || || |||||| Sbjct 43106 CAAAGGCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGACGTACTCTAGCTGATTACAAC 43047 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | || ||||| Sbjct 43046 ATCCAGAAGGAGTCTACCCTCCATTTGGTG 43017 >seq8 Length=4063183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| || || || || || ||||| | || ||| ||| Sbjct 1948518 ATGCAGATCTTTGTGAAAACCTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCTCT 1948577 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || ||| || ||||| ||||| | || ||||| Sbjct 1948578 -GACACTATTGACAATGTCAAGGCAAAAATCCAAGATAAGGAAGGAATTCCTCCAGATCA 1948636 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | ||| ||||||||| ||||||| | | ||| | || |||||||| Sbjct 1948637 GCAGAGATTGATCTTTGCCGGTAAACAGTTGGAGGATGGAAGAACTCTAGCTGACTACAA 1948696 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 1948697 CATCCAAAAGGAGTCCAC 1948714 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||| || || || ||||| || ||||| ||| | || ||| | Sbjct 1948974 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATCACCCTTGAGGTTGAGAGTTCT 1949033 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || || ||| ||||| |||||| | || || ||| Sbjct 1949034 GACACCATCGACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCAG 1949093 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || |||||||| ||||| | | || | || || |||||| Sbjct 1949094 CAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCTAGCAGATTACAAC 1949153 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||| || || | || ||||| || Sbjct 1949154 ATTCAAAAGGAATCAACTCTCCATTTGGTGCTG 1949186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398804590086406