Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq128 98.7 1e-15 seq146 89.7 5e-13 seq8 82.4 7e-11 >seq128 Length=1543362 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 ||||||| |||||||| || ||||| | || || || || || ||||| || || ||| Sbjct 1024982 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCT 1025041 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || ||| ||| || ||||||||||||||| |||||| ||| ||||| || || || Sbjct 1025042 -AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1025100 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| ||| ||| ||| | | || | || |||| || || Sbjct 1025101 AATACCCTCCTTGTCTTGAATCTTTGCTTTGACGTTGTCAATGGTATCTGAACTCTCAAC 1025160 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || ||||| || || || || |||||||| Sbjct 1025161 CTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1025208 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || ||||| ||||||||||| | ||| | ||||| || ||| Sbjct 1025918 TGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1025977 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| ||||||| | ||||| || || || || ||||| ||||| |||||| Sbjct 1025978 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1026037 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||||| | || || |||| ||| | ||||| |||||| Sbjct 1026038 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 1026097 Query 137389 AATGTTTTTACGAATATTTGCAT 137411 | ||||| || || |||||||| Sbjct 1026098 AGAGTTTTAACAAAGATTTGCAT 1026120 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/129 (77%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 137256 || ||| | ||||| || |||||||| || ||||||||||| || || |||| Sbjct 797417 CAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGT--TCGACCA 797360 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| Sbjct 797359 TCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTA 797300 Query 137317 TC--GGTAA 137323 || ||||| Sbjct 797299 TCCTGGTAA 797291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || || |||| || || || || || ||||||||||| Sbjct 55897 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 55838 Query 137245 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 137302 | | | |||| |||||||| ||||| || ||| ||||||| | ||||||||| || | Sbjct 55837 A--GGGTTCGACCATCTTCGAGCTGTTTCCCTGCAAAGATCAGTCTTTGCTGATCAGGGG 55780 Query 137303 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTA 137362 | || ||||| ||||| || || ||| | | || | ||||||| ||||| Sbjct 55779 GAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAACTTTCTA 55720 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | |||| || | ||||| || || | ||||| ||||| || ||||| Sbjct 55719 CCTCAAGGGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAGATCTGCAT 55671 >seq8 Length=4063183 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||||| | || ||||| | ||| || ||||| || || |||||||| Sbjct 1949428 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 1949369 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || || || || || || |||||| | || | ||| ||||| || || || Sbjct 1949368 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 1949309 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || ||| || | | || | ||||||| |||||| Sbjct 1949308 ATCCCTTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCTGAACTTTCTACC 1949249 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || |||||||| || || || || |||||| Sbjct 1949248 TCCAGGGTGATTGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATA 1949201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488453289592800