Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq84 122 1e-22 seq242 107 3e-18 >seq84 Length=1873685 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| || || | |||| ||||||| |||| | || | |||||||||| ||| || Sbjct 702150 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGTAGCATCGGAACAATTCCG 702209 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || || | |||||||| | |||| Sbjct 702210 TTTGATGTCCCATTTGTTCCACGAATATAACTCCCAGTTCCACGAATATTGTGCACAGAT 702269 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || |||||||| || ||| || | |||||| || | ||||||||||| Sbjct 702270 ACTCCAATTCCTCCAGCAGATTTGCTAATAACAGCACACTCCTTAAGAGTGTCATATATG 702329 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||||||| ||||| | || || |||||| Sbjct 702330 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 702371 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | || ||||| || |||||||||||| | | ||| | || || Sbjct 702471 AGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACCATCTCTGAGACATCAAATG 702530 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 || || | || || ||||| ||||| || ||| || || | | ||| | ||||| Sbjct 702531 ATAAGTCTTGATGGCAGATTCAATATCATTCTTATGTATCCCAACAGAGACTCTCATCAG 702590 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 |||||| || || | |||||| ||| || || || || ||||| || ||||| Sbjct 702591 CATATGTTGTGGCCTTTCTACAACTTTCCCATCAATCTTTAAGAGGTAAGACCGCTCCAG 702650 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || |||||| || || || || || Sbjct 702651 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTGTCATATATGAT 702698 >seq242 Length=1004679 Score = 107 bits (118), Expect = 3e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | ||||||||||| | |||| | || | |||||| |||| ||| ||| Sbjct 788090 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 788031 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | || ||||||||| ||||||||| || | || || || || | |||| Sbjct 788030 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 787971 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | || ||||| || || ||| || | |||||| || | || |||||||| Sbjct 787970 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATG 787911 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| || ||||||||| ||||| | || || |||||| Sbjct 787910 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 787869 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||||| ||| |||||||| ||||||||||| || ||| | || | Sbjct 787667 AGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAACTG 787608 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| | || | ||||| |||||| | || ||||| | | || | ||||| Sbjct 787607 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 787548 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | |||||| | || | || || || ||||| || |||| || Sbjct 787547 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 787488 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||||||||| ||||| || || Sbjct 787487 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCTGTCGTATATGAT 787440 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||||||||||||| ||| |||||| || || || || ||||| ||| ||||||| Sbjct 788605 CTCTTTTTCATATTTTGTGTATAGCTTCTCAAAATCTTCACCCCAGCAATCTGCCAATCC 788546 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 |||| ||| |||||| | ||| ||||| || ||| | ||| |||| || |||| Sbjct 788545 AGGAGCCTCACATGGACAAAACAAAGACCATACCCCAT--TGCTTTGGACTCTTTGCATA 788488 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 || ||||| || | ||||||||| ||| || ||||| | | | ||| ||||| Sbjct 788487 AAAAGATCTGGTACCCAAAGAGC-ATAGAAAAGATCCCGTGCCCGATTCTCTTC 788435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686781258208560