Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4 140 3e-28 >seq4 Length=4469570 Score = 140 bits (154), Expect = 3e-28 Identities = 380/579 (66%), Gaps = 2/579 (0%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| |||||||| |||| | || ||| |||||||||| ||||| ||| || || | Sbjct 3868501 TGTTCCCAATTCAGTATCCACAGATTTGGGAAATGTACAAGAAAGCCATGGCATCTTTCT 3868560 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATTAAAACCA 43825 |||| | ||||||||| ||| | || || | | | || ||| ||| | | Sbjct 3868561 GGACGGTAGAAGAAGTCGATCTATCTTCTGA-TAATCGTCACTGGGAAAACCTAACATCC 3868619 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 |||| |||||| || || || | || || ||||| || ||||| || || Sbjct 3868620 GGTGAAAGACATTTCATCACTCATGTGCTTGCCTTCTTTGCCGCCTCAGACGGCATCGTT 3868679 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || || | | | | |||| | |||| || || | | || || || ||| Sbjct 3868680 TTAGAGAACCTCGCTGGAAGGTTCATGAAAGATGTCCAGGTTGCTGAGGCGCGTGCTTTC 3868739 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 |||||||| ||||| ||||| || ||||| ||||| || ||||||||| | ||| | || Sbjct 3868740 TATGGGTTCCAAATCGCCATTGAGAATATCCATTCCGAGATGTACAGTTTGCTGTTGGAG 3868799 Query 44006 ACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCT 44065 ||||||| || ||| |||| ||| |||||| ||| || || || | ||| Sbjct 3868800 TCGTACATAAAGGATTCTGACGAAAAGAGCAAATTGTTCCGTGCAATCGAGACCATCCCT 3868859 Query 44066 GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGA 44125 || || | || || | ||||||||| ||||| || || | || | Sbjct 3868860 TGTGTTGAAAAGAAGGCGAAATGGGCCCTTCGTTGGATCGATGGTTCCGAAACCTTCGCG 3868919 Query 44126 GAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCC 44185 || || | || || ||||| ||| ||||| |||||||| ||| || | Sbjct 3868920 GAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCG 3868979 Query 44186 ATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATA 44245 ||||||||||| || ||||| || || |||||||| || || || |||||||||||||| Sbjct 3868980 ATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATT 3869039 Query 44246 AGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || ||||| || || || |||||||| || ||| Sbjct 3869040 TCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTG 3869078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397384047298270