Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq146 89.7 4e-13 seq10 89.7 4e-13 seq128 86.0 5e-12 >seq146 Length=1436832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||||||||| ||| | | || ||||||| Sbjct 47219 ACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCTTCA 47160 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||| || ||||| || | || || || || | Sbjct 47159 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGG 47100 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| ||| | | | || | ||||||| | ||| || || || || |||| || Sbjct 47099 ATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGTGATAGTCTTT 47040 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || ||||| |||||||||||||| Sbjct 47039 CCAGTGAGGGTTTTGACAAAGATTTGCAT 47011 >seq10 Length=3946082 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 |||| ||||| ||||| || ||| || || | ||||||||||| || |||||| | Sbjct 3853637 CTTTCTGAATGTTGTAATCAGCTAGAGTA-CGTCCATCTTCGAGCTGCTTTCCGGCGAAG 3853579 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||||| || ||||| || | ||| || || || ||||| ||| | | Sbjct 3853578 ATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTG 3853519 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | |||||| | | ||||||||| || || || | || ||||| ||||||||||| Sbjct 3853518 TCAATAGTGTCGCTCGATTCAACTTCGAGTGTGATCGTCTTCCCCGTAAGAGTTTTCACG 3853459 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 3853458 AAGATCTGCAT 3853448 >seq128 Length=1543362 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || ||||||||||| | | |||| | || || |||||||| || Sbjct 1024784 GTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGGCCATCCTCCAGCTGTTTGCCA 1024843 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||||||||| || || | || || || || ||||| |||| Sbjct 1024844 GCAAAGATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTGTCCTGTATCTTTGCTTTC 1024903 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | || || || | || || | || || |||||||| Sbjct 1024904 ACATTGTCAATAGTGTCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTC 1024963 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1024964 TTCACAAAGATCTGCAT 1024980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424857472797648