Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq102 116 5e-21 seq32 104 3e-17 seq4 93.3 5e-14 seq242 87.8 2e-12 >seq102 Length=1742045 Score = 116 bits (128), Expect = 5e-21 Identities = 282/420 (67%), Gaps = 8/420 (2%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| ||||| | ||||| || ||||||| ||| | || ||||| | || || Sbjct 801232 TCAAGAATATCTGCACGATTGGTTGCCGCAACAACTATTATACCAGTATTTCCTTCGAAA 801291 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | || ||| || | || ||||| || ||||||||| || | | Sbjct 801292 CCATCCATTTCAGTCAATAGTTGGTTCAGGGTCTGTTCCCTTTCATCATTTCCT--CCTC 801349 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | |||| || || |||||||| ||||||| || ||||| || | Sbjct 801350 CAATTCCAGTCCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAAG 801409 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | |||||| ||| | | || ||||| || || | ||| || |||||||||| Sbjct 801410 GAGCATTTTCCTTGGCCTTCTTGAAAAGATCACGGACTCGAGAGGCTCCAACACCAACAA 801469 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCG 11779 ||||||| || || | || | | || | || || ||||| ||| || |||||| || Sbjct 801470 ACATCTCAACGAATTCTGAGCCTGA-AATTGAGAAAAATGGAACACCTGCTTCACCAGCA 801528 Query 11780 ATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGG 11839 || || || || | ||| || || ||||| || ||| | ||||| | ||| Sbjct 801529 ATTGCCTTTGCTAGCAAGGTTTTCCCAGTACCAGGAGGACCAACAAGAAGAACACCTTTT 801588 Query 11840 GGGAT-CTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 || || | | | |||| | || | ||||||| |||| ||| | ||| || || | ||| Sbjct 801589 GGAATACGAGCCCCCAC-TGCAGTAAATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 801647 >seq32 Length=2710826 Score = 104 bits (114), Expect = 3e-17 Identities = 194/285 (68%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || ||||||||||||||| | Sbjct 1990071 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 1990016 Query 11600 ATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 ||||||| |||| | || | ||||| ||||||||||||||||| || ||| Sbjct 1990015 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 1989958 Query 11654 ATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACC 11709 ||||| || || |||| || | ||||| | ||| | ||| || || || Sbjct 1989957 ATACAAGGCGCTTTAGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCC 1989902 Query 11710 CACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGA 11769 |||||| ||||||| ||| ||||| | || || | || || ||||| ||| | Sbjct 1989901 CACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGC 1989842 Query 11770 TTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||||| || | |||| || | |||||||| || |||||||| Sbjct 1989841 CTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 1989797 >seq4 Length=4469570 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 3869071 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 3869012 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 3869011 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 3868952 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCATCAAA 122837 || || ||||| ||||| || | | ||| || ||||||| || || |||| | Sbjct 3868951 CCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAGGTTTCGGAAC----CATCGAT 3868896 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 122876 ||| | ||||||||||||||||| |||| ||| || Sbjct 3868895 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGG 3868857 >seq242 Length=1004679 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || |||||||| || || ||||| | ||| ||| ||||| | ||| Sbjct 787678 TGAGGCCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 787619 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 787618 GACATCAACTGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 787559 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 || | ||| | ||||| ||||| |||| | | | || | || | || | || || Sbjct 787558 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCT-GAATCTTTAAGAGGTA 787500 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 112164 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 787499 AGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 787455 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||||| |||| || || ||||| || | |||||||||||| || ||| | |||| Sbjct 789027 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTTGTG 788968 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | ||| |||||||| ||||| ||| ||| || || || | ||||| ||||| Sbjct 788967 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 788908 Query 111341 CTCTTCTTGTTGCACGCATCCT 111362 || || | ||||| | ||||| Sbjct 788907 CTTTTTCTATTGCAAGAATCCT 788886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627915390158400