Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq102 134 2e-26 seq32 102 1e-16 >seq102 Length=1742045 Score = 134 bits (148), Expect = 2e-26 Identities = 307/450 (68%), Gaps = 18/450 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 801201 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 801260 Query 9586 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 801261 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 801318 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9701 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 801319 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 801376 Query 9702 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 9760 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 801377 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 801435 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 ||||| || || || ||| || ||||||||||||||||| || || | || | | ||| Sbjct 801436 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA 801495 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 801496 -ATTGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 801554 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT-CTTGGCGCCACTTCCAAAGT 9938 ||||| || ||| | || || ||||| |||||| | | | ||||| | ||| Sbjct 801555 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCCCCCACTGC---AGT 801611 Query 9939 --ATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||||||| ||| | ||| || || Sbjct 801612 AAATCTCTCAGGTTTCTTCAAAAATTCTAC 801641 >seq32 Length=2710826 Score = 102 bits (112), Expect = 1e-16 Identities = 197/287 (69%), Gaps = 24/287 (8%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || |||||||| || |||||||| || || | |||||||| | Sbjct 1990071 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 1990016 Query 9674 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 ||||||| |||| | || ||||||| ||||||||||||||||| || || Sbjct 1990015 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 1989958 Query 9728 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCG 9781 || || || || |||||| | ||||| | ||||| || || || | || Sbjct 1989957 ATACAAGGCGCTTTAGATTTCGCCTTC----TCAAACAAATCCC-TA-ACTCTAGAAGCT 1989904 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841 |||||||| ||||||| ||| ||||| | || || | ||| || || || ||| | Sbjct 1989903 CCCACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCA 1989844 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | ||||| || | |||| || | ||| ||||| || |||||||| Sbjct 1989843 GCCTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 1989797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583152503050960