Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20tuberosum_20[refseq_20GCF_5F000226075.1_202011-09-19] 14,854 sequences; 705,934,411 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq148 86.0 7e-12 seq59 86.0 7e-12 seq770 82.4 8e-11 seq586 82.4 8e-11 seq294 82.4 8e-11 >seq4 Length=4469570 Score = 131 bits (144), Expect = 2e-25 Identities = 292/424 (69%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| | ||||| ||||| || || ||||| || || | | |||||||| | || Sbjct 3869059 TGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCATTAACCCC 3869000 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 || || ||||||||||| || | ||||||| || |||||||| || ||||| ||||| Sbjct 3868999 CGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTTCAACACAA 3868940 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939 ||||| || || | ||| | |||||| ||| |||||| || |||||| | ||| Sbjct 3868939 GCAAAAGCCACCAAGCGCTCCGCGAA-GGT--TTCGGAACCATCGATCCAACGAAGGGCC 3868883 Query 74940 CATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGCTTGGAAGAGGCTTGC-CT 74997 |||| || ||| ||| | | | ||||| || ||||| || |||| | |||| || Sbjct 3868882 CATTTCGC-CTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACA-ATTTGCTCT 3868825 Query 74998 TCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCG 75057 | || || | |||||| | | | || | || | |||| |||| ||||| || Sbjct 3868824 TTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAATGGATAT 3868765 Query 75058 ACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT- 75115 ||| || ||| ||| || | ||||||| |||||||| |||| ||| ||||| || Sbjct 3868764 TCTCAATG-GCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACATCTTTC 3868706 Query 75116 -TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCA 75174 |||| | || ||| ||||| | ||||||||||| |||||||| || || || | Sbjct 3868705 ATGAACCTTCCA--GCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAGAAGGCAA 3868648 Query 75175 GTAC 75178 | || Sbjct 3868647 GCAC 3868644 >seq148 Length=1432980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 628454 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 628513 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 628514 TGAGCTATGAAAGC 628527 >seq59 Length=2184951 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1024480 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1024421 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 1024420 TGAGCTACGAGAGC 1024407 >seq770 Length=121610 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 57099 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 57040 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 57039 TGAGCTATGAAAGCA 57025 >seq586 Length=277707 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 237834 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 237775 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| || |||| Sbjct 237774 TGAGCTATGAGAGCA 237760 >seq294 Length=814182 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| |||||||||||||||||| |||||||| ||| Sbjct 160155 GATTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACAGGTGCTCTAACC 160096 Query 79681 AATTGAGCTACGAAAGC 79697 || ||||||| |||||| Sbjct 160095 AACTGAGCTATGAAAGC 160079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547114395669200